Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4572	PP_4573	PP_4574	PP_4575	PP_4576
nitrogen source	L-pyroglutamic (N)	-0.1	-0.1	-0.1	-4.2	-3.8
nitrogen source	L-pyroglutamic (N)	-0.0	+0.1	+0.1	-3.8	-3.6
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.4	-0.0	-0.1	-1.8	-1.2
carbon source	L-Glutamic (C)	-0.0	+0.2	-0.2	-1.4	-1.6
carbon source	Valeric (C)	-0.2	-0.3	-0.2	-1.1	-0.8
carbon source	L-Lysine 10 mM (C)	+0.3	-0.1	+0.2	-1.4	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+0.1	-0.2	-1.4	-0.8
carbon source	L-Lysine (C)	-0.1	-0.1	-0.4	-0.7	-1.1
carbon source	L-Glutamic (C)	+0.1	-0.1	+0.2	-1.1	-1.4
carbon source	L-Lysine (C)	+0.1	+0.0	-0.0	-1.5	-0.8
carbon source	Delta-Decalactone (C)	+0.1	-0.5	-0.2	-1.2	-0.4
micoeukaryotes	C.elegans, mixed culture-2	-0.0	-0.4	-0.4	-0.4	-0.9
carbon source	L-Glutamine (C)	-0.2	+0.1	+0.0	-1.0	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.1	-0.2	+0.0	-1.1	-0.6
carbon source	L-Lysine (C)	+0.2	-0.0	-0.0	-1.2	-0.7
carbon source	Hexanoic (C)	+0.2	-0.0	-0.0	-1.1	-0.8
carbon source	butyrate (C)	+0.1	+0.1	-0.3	-1.1	-0.5
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	+0.1	+0.1	+0.2	-1.2	-0.7
nitrogen source	Propiolactam (N)	-0.2	+0.2	+0.4	-1.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.3	-0.3	-1.4
pH	Growth at pH7 and (C) Trisodium citrate	-0.4	+0.3	-0.1	-0.8	+0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	+0.3	+0.2	-1.4	+0.5
carbon source	carbon source D-Glucose 55.5 mM	-0.5	+0.3	+0.2	+0.6	-1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.4	+0.1	-1.2	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6	-0.5	+0.5	+0.9	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.8	+0.4	+0.3	+0.6	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.5	-0.2	+0.4	+0.9	-0.7
carbon source	Delta-Nonalactone (C)	+0.0	+1.0	+1.1	-0.6	-0.5
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.1	+0.3	-0.3	+0.6	+1.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.3	-0.0	-0.0	+1.6	+2.0