Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4571	PP_4572	PP_4573	PP_4574	PP_4575
nitrogen source	L-pyroglutamic (N)	+0.0	-0.1	-0.1	-0.1	-4.2
nitrogen source	L-pyroglutamic (N)	-0.1	-0.0	+0.1	+0.1	-3.8
carbon source	4-Hydroxyvalerate (C) (40mM)	-3.6	+0.1	-0.1	-0.0	+0.0
carbon source	4-Hydroxyvalerate (C) (40mM)	-3.5	+0.0	-0.0	+0.1	+0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.2	-0.4	-0.0	-0.1	-1.8
pH	Growth at pH7 and (C) D-Glucose	-1.0	-0.3	-0.3	-0.2	-0.2
stress	R2A with Fusaric 240 ug/mL	-0.9	-0.3	-0.0	-0.3	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	-0.3	+0.1	-0.2	-1.4
micoeukaryotes	C.elegans, mixed culture-1	-0.7	+0.1	-0.2	-0.3	-0.7
carbon source	L-Glutamic (C)	-0.3	-0.0	+0.2	-0.2	-1.4
carbon source	L-Lysine 10 mM (C)	-0.7	+0.3	-0.1	+0.2	-1.4
carbon source	Delta-Decalactone (C)	-0.0	+0.1	-0.5	-0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.1	+0.4	+0.1	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7	+0.4	-0.5	+0.0	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	+0.1	+0.3	+0.2	-1.4
carbon source	acetate (C)	-0.1	+0.0	+0.4	-0.1	-1.3
pH	Growth at pH7 and (C) D-Glucose	-0.7	+0.2	-0.3	+0.2	-0.6
nitrogen source	NAG (N); with MOPS	-0.7	+0.5	-0.4	+0.1	-0.4
pH	Growth at pH6 and (C) D-Glucose	-1.0	+0.0	-0.4	+0.0	+0.5
nitrogen source	Propiolactam (N)	+0.2	-0.2	+0.2	+0.4	-1.4
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-1.4	+0.1	+0.3	-0.3	+0.6
pH	Growth at pH6 and (C) D-Glucose	-1.2	+0.2	+0.2	-0.2	+0.3
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.5	-0.3	-0.0	-0.0	+1.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.4	+0.1	-0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.7	-0.8	+0.4	+0.3	+0.6
carbon source	carbon source D-Glucose 55.5 mM	-0.5	-0.5	+0.3	+0.2	+0.6
nitrogen source	D-2-Aminobutyric (N)	-0.8	+0.5	-0.2	+0.4	+0.9
nitrogen source	nitrate (N)	-0.6	+0.6	+0.1	+0.3	+0.4
carbon source	Delta-Nonalactone (C)	-0.1	+0.0	+1.0	+1.1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	+0.6	-0.5	+0.5	+0.9