Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4570 and PP_4571 are separated by 173 nucleotidesPP_4571 and PP_4572 are separated by 132 nucleotidesPP_4572 and PP_4573 are separated by 201 nucleotidesPP_4573 and PP_4574 are separated by 13 nucleotides PP_4570: PP_4570 - conserved protein of unknown function, at 5,189,330 to 5,190,265 _4570 PP_4571: PP_4571 - cysteine synthase A, at 5,190,439 to 5,191,413 _4571 PP_4572: PP_4572 - conserved exported protein of unknown function, at 5,191,546 to 5,192,619 _4572 PP_4573: PP_4573 - ATPase, AAA family, at 5,192,821 to 5,193,666 _4573 PP_4574: PP_4574 - conserved protein of unknown function, at 5,193,680 to 5,194,858 _4574
Group Condition PP_4570 PP_4571 PP_4572 PP_4573 PP_4574
carbon source 4-Hydroxyvalerate (C) (40mM) -0.2 -3.6 +0.1 -0.1 -0.0
phage P. put South MOI 10 -2.6 -0.1 -0.0 -0.5 -0.3
carbon source 4-Hydroxyvalerate (C) (40mM) -0.0 -3.5 +0.0 -0.0 +0.1
phage P. putida South MOI 10 -2.4 -0.1 +0.1 -0.4 -0.3
carbon source ferulate (C); with MOPS -1.6 -0.9 -0.1 +0.0 -0.2
stress R2A with Fusaric 480 ug/mL -1.7 -1.1 +0.1 +0.1 +0.3
carbon source ferulate (C); with MOPS -1.6 -1.0 +0.3 -0.1 +0.3
stress R2A with Fusaric 480 ug/mL -1.6 -0.9 -0.1 +0.4 +0.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 -1.5 -0.3 -0.0 -0.0
stress R2A with Fusaric 480 ug/mL -1.6 -0.9 +0.0 +0.3 +0.1
pH Growth at pH7 and (C) D-Glucose -0.2 -1.0 -0.3 -0.3 -0.2
phage P. putida South MOI 10 -2.3 -0.4 +0.2 +0.1 +0.4
stress R2A with Fusaric 480 ug/mL -1.6 -0.8 -0.0 +0.1 +0.3
phage P. putida South MOI 0.1 -1.7 +0.0 +0.1 -0.3 -0.1
temperature shift Temperature shift 10_to_30; with MOPS -0.4 -0.6 +0.0 -0.6 -0.3
stress R2A with Fusaric 480 ug/mL -1.5 -0.6 -0.0 +0.1 +0.4
phage PUT8 MOI 0.1 -1.4 +0.1 -0.2 -0.3 +0.1
carbon source ferulate (C); with MOPS -1.7 -0.6 -0.1 +0.5 +0.2
stress R2A with Fusaric 480 ug/mL -1.4 -0.7 -0.0 +0.2 +0.3
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.1 -1.4 +0.1 +0.3 -0.3
carbon source D-Glucose (C) +0.3 +0.2 -0.3 -0.8 -0.4
nitrogen source NAG (N); with MOPS -0.3 -0.7 +0.5 -0.4 +0.1
carbon source 2,3-Butanediol (C) -1.3 +0.3 +0.2 -0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.4 -0.7 -0.8 +0.4 +0.3
nitrogen source D-2-Aminobutyric (N) +0.4 -0.8 +0.5 -0.2 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -0.1 +0.6 -0.5 +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.9 -0.3 +0.0 -0.0 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.3 -0.3 +0.5 +0.0 -0.1
carbon source Delta-Nonalactone (C) -0.4 -0.1 +0.0 +1.0 +1.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.6 -0.1 +0.3 +0.1 +0.2
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