Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4564	PP_4565	PP_4566	PP_4567	PP_4568
carbon source	1,3-Hexanediol (C)	+0.1	-5.8	+0.1	+0.2	-0.7
carbon source	1,3-Hexanediol (C)	+0.1	-5.8	-0.3	+0.1	+0.1
carbon source	3-Hydroxypropionate (C)	-0.3	-4.1	+0.1	-0.1	-0.0
carbon source	3-Hydroxyhexanoic (C)	-0.3	-3.8	+0.1	-0.0	-0.1
carbon source	Butanol (C)	+0.1	-4.0	+0.2	+0.0	-0.0
carbon source	3-Hydroxyhexanoic (C)	+0.0	-4.0	+0.2	-0.1	+0.2
carbon source	3-Hydroxypropionate (C)	-0.1	-3.4	-0.0	+0.0	+0.1
pH	Growth at pH6 and (C) D-Glucose	-1.3	-0.1	+0.2	-0.3	-0.1
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.3	-1.2	+0.4	-0.2	-0.2
nitrogen source	Ammonium chloride (N); with MOPS	-0.7	-0.3	-0.7	+0.2	+0.4
carbon source	Butyl stearate (C)	+0.2	-1.5	+0.1	-0.1	+0.2
carbon source	3-methyl-3-butenol (C)	+0.1	-1.2	+0.3	-0.1	-0.1
carbon source	D-Glucose (C); with MOPS	-0.0	-0.2	+0.5	-0.3	-0.9
temperature shift	Temperature shift 10_to_25; with MOPS	+0.5	-0.1	-0.2	-0.4	-0.7
carbon source	Beta-alanine (C)	-0.3	-1.0	+0.1	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.1	-0.8	+0.5	-0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.7	+0.2	-0.5	-0.4	-0.6
nitrogen source	nitrate (N)	-0.8	+0.1	+0.5	+0.3	-0.6
carbon source	L-Leucine (C)	+0.3	-0.9	+0.5	-0.1	-0.3
carbon source	1,3-Butandiol (C)	+0.1	-1.2	+0.1	+0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.1	+0.5	-0.2	+0.2
nitrogen source	2,6-diaminopimelic (N)	-0.9	+0.0	+0.6	-0.2	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.2	-0.2	+0.5	+0.5
phage	P. putida South MOI 10	-1.1	-0.0	+0.3	+0.1	+0.6
nitrogen source	NAG (N); with MOPS	+0.6	+0.1	+0.3	+0.1	-0.9
pH	pH 6	+0.3	+0.1	+0.1	-0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.2	+0.4	-0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.9	-0.2	-0.2	+0.3	+0.6
pH	Growth at pH6 and (C) D-Glucose	+0.4	+0.2	+0.4	-0.2	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	+0.7	+0.2	+0.6	+0.3	+0.0