Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4561	PP_4562	PP_4563	PP_4564	PP_4565
carbon source	1,3-Hexanediol (C)	-0.3	N.D.	-0.1	+0.1	-5.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-5.4	N.D.	-0.5	-0.0	-0.0
carbon source	1,3-Hexanediol (C)	-0.1	N.D.	-0.0	+0.1	-5.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-4.6	N.D.	-0.5	-0.5	-0.1
stress	R2A with Fusaric 480 ug/mL	-5.3	N.D.	-0.1	+0.1	-0.1
stress	Growth with Chloride 500 mM; with MOPS	-4.8	N.D.	-0.3	-0.0	-0.1
carbon source	D-Glucose (C)	-4.7	N.D.	+0.1	-0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-4.8	N.D.	-0.0	+0.0	-0.1
temperature	Growth at 30C	-4.7	N.D.	-0.0	+0.1	+0.1
temperature shift	Temperature shift 30_to_25; with MOPS	-4.4	N.D.	+0.1	+0.2	-0.3
nitrogen source	Urea (N)	-4.5	N.D.	-0.1	+0.3	-0.0
nitrogen source	Urea (N)	-4.5	N.D.	+0.2	-0.1	+0.0
carbon source	3-Hydroxyhexanoic (C)	-0.1	N.D.	-0.0	-0.3	-3.8
nitrogen source	nitrogen source nitrite 1mM	-4.2	N.D.	-0.1	+0.2	-0.1
pH	Growth at pH6 and (C) D-Glucose	-4.6	N.D.	-0.2	+0.4	+0.2
temperature shift	Temperature shift 10_to_30; with MOPS	-3.7	N.D.	-0.3	+0.1	-0.2
temperature	Growth at 25C	-2.7	N.D.	-0.7	-0.5	+0.0
carbon source	3-Hydroxyhexanoic (C)	+0.1	N.D.	+0.1	+0.0	-4.0
carbon source	Butanol (C)	-0.0	N.D.	+0.2	+0.1	-4.0
pH	Growth at pH7 and (C) Trisodium citrate	-4.5	N.D.	-0.0	+0.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-3.3	N.D.	-0.2	+0.1	-0.1
carbon source	3-Hydroxypropionate (C)	+0.1	N.D.	+0.0	-0.1	-3.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-3.6	N.D.	-0.5	+0.7	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-3.4	N.D.	+0.0	+0.1	+0.1
pH	Growth at pH6 and (C) D-Glucose	-2.0	N.D.	+0.3	-1.3	-0.1
carbon source	Ethyl decanoate (C)	-2.9	N.D.	+0.2	+0.0	-0.4
carbon source	L-Phenylalanine 5 mM (C)	-3.3	N.D.	+0.2	+0.1	+0.1
carbon source	3-Hydroxypropionate (C)	+1.3	N.D.	-0.0	-0.3	-4.1
carbon source	ferulate (C); with MOPS	-2.7	N.D.	-0.3	+0.5	-0.1
carbon source	Myristic (C)	-2.9	N.D.	+0.2	+0.5	+0.0