Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4544	PP_4545	PP_4546	PP_4547	PP_4548
nitrogen source	Propandiamine (N)	-0.3	+0.7	-1.2	-5.3	-5.7
nitrogen source	Propandiamine (N)	+0.1	+0.8	-1.1	-5.9	-5.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.1	-0.5	-2.8	-0.2	-0.0
carbon source	Decanoic (C)	-0.0	-1.2	-0.4	-0.8	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.0	-1.4	-2.5	+0.1	+0.2
carbon source	Delta-Undecalactone (C)	-0.1	-1.6	-1.6	-0.1	-0.2
carbon source	Octanoic (C)	+0.0	-0.7	-1.8	-0.3	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.0	-1.0	-2.2	-0.1	-0.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.1	-0.7	-1.7	-0.4	-0.4
carbon source	Decanoic (C)	-0.0	-1.1	-0.8	-0.4	-0.9
temperature	Growth at 30C; with MOPS	+0.0	-0.2	-2.4	-0.3	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-1.0	-2.1	-0.0	-0.2
pH	Growth at pH6 and (C) D-Glucose	-0.3	-0.4	-2.0	-0.1	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-1.3	-1.6	-0.1	-0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.1	+0.0	-2.8	-0.0	-0.1
carbon source	Nonanoic (C)	-0.2	-0.1	-1.1	-0.6	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	+0.2	-2.2	-0.5	-0.3
carbon source	5-Hydroxydodecanoate (C)	+0.1	-1.3	-1.3	-0.0	-0.3
nitrogen source	NAG (N); with MOPS	-0.1	+0.1	-2.1	-0.4	-0.3
carbon source	Delta-Undecalactone (C)	+0.0	-1.2	-1.5	+0.3	-0.3
pH	Growth at pH7 and (C) D-Glucose	-0.1	+0.2	-1.9	-0.5	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.0	-0.6	-2.3	+0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	+0.6	-3.0	-0.2	-0.1
carbon source	2,3-Butanediol (C)	+0.3	-0.7	-1.0	-0.3	-0.7
nitrogen source	Urea (N)	-0.1	+0.2	-2.6	+0.1	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	+0.5	-2.4	-0.0	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.1	-1.9	+0.3	-0.6
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.2	+0.5	-1.9	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4	+0.1	-2.1	+0.2	-0.3
nitrogen source	D-2-Aminobutyric (N)	-0.2	+1.4	-1.0	-0.5	-0.1