Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_4521	PP_4522	PP_4523	PP_4524	PP_4525
carbon source	L-Arginine (C)	-0.0	-1.3	-1.5	-0.4	+0.0
nitrogen source	4-Guanidinobutyric (N)	-0.1	-0.9	-1.2	-0.8	-0.1
nitrogen source	4-Guanidinobutyric (N)	-0.2	-0.9	-0.9	-0.8	+0.0
nitrogen source	NAG (N); with MOPS	-0.5	+0.0	-1.0	-0.3	+0.2
phage	P. putida PUT 7 MOI 1	-0.3	-0.3	-0.5	-0.2	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-0.5	-0.9	-0.0	+0.0
nitrogen source	no extra (N)	-0.8	-0.2	-0.1	-0.0	-0.1
temperature	Growth at 30C; with MOPS	-0.3	-0.1	-0.9	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.3	-0.8	+0.1	-0.0
nitrogen source	Propiolactam (N)	-0.2	-0.3	-0.1	+0.2	-0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.3	-0.4	+0.3	-0.2
nitrogen source	no extra (N)	-1.0	-0.0	-0.2	+0.0	+0.1
carbon source	L-Phenylalanine 5 mM (C)	-0.6	+0.1	-0.3	+0.1	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.2	-0.2	-0.5	-0.2	+0.3
nitrogen source	Propiolactam (N)	+0.2	+0.1	-0.0	-0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	-0.0	+0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	-0.4	-0.5	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	-0.5	-0.3	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2	+0.3	-0.4	+0.3	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2	-0.0	-0.5	+0.1	+0.4
nitrogen source	nitrite (N)	-0.3	+0.1	+0.5	-0.2	-0.3
carbon source	ferulate (C); with MOPS	-0.2	-0.5	+0.2	+0.0	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.2	-0.8	+0.4	-0.0
carbon source	4-Aminobutyric 10 mM (C)	+0.2	+0.1	+0.5	-0.1	-0.4
pH	pH 9	+0.4	+0.2	-0.4	+0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2	-0.2	+0.4	-0.1	+0.6
temperature shift	Temperature shift 10_to_30	+0.8	+0.0	+0.1	+0.0	-0.3
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.2	+0.4	-0.3	+0.1	+0.5
carbon source	L-Lysine (C)	-0.2	+0.2	+0.3	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.4	+0.1	+0.1	+0.5