Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4515 and PP_4516 are separated by 151 nucleotidesPP_4516 and PP_4517 are separated by 243 nucleotidesPP_4517 and PP_4518 are separated by 7 nucleotidesPP_4518 and PP_4519 are separated by 311 nucleotides PP_4515: PP_4515 - Transcriptional regulator, MarR family, at 5,128,667 to 5,129,104 _4515 PP_4516: PP_4516 - ATP-dependent DNA 3, at 5,129,256 to 5,131,403 _4516 PP_4517: PP_4517 - conserved protein of unknown function, at 5,131,647 to 5,132,234 _4517 PP_4518: PP_4518 - conserved protein of unknown function, at 5,132,242 to 5,132,607 _4518 PP_4519: PP_4519 - Agglutination protein, at 5,132,919 to 5,134,277 _4519
Group Condition PP_4515 PP_4516 PP_4517 PP_4518 PP_4519
phage P. put South MOI 10 -1.3 -0.0 -6.9 -0.2 +0.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.3 -0.2 -3.2 -0.3 -3.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 -0.1 -6.5 -0.8 +0.5
phage P. put PUT 10 MOI 0.1 -2.6 -0.0 -3.4 -0.2 -0.2
carbon source Trisodium citrate (C) -0.6 -0.3 -5.3 -0.5 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +0.3 -5.6 -0.8 -0.4
temperature shift Temperature shift 30_to_4 -0.1 -0.3 -5.5 +0.0 -0.3
micoeukaryotes C.elegans, mixed culture-1 -0.1 +0.0 -2.9 -0.3 -2.8
phage P. put South MOI 1 -2.3 -0.1 -1.5 -0.6 -1.4
carbon source Vanillin (C) -4.2 +0.1 -1.8 -0.1 +0.2
phage P. put South MOI 0.1 -1.5 -0.0 -2.4 +0.0 -1.9
stress Growth with Chloride 500 mM; with MOPS -0.2 +0.0 -2.0 -0.4 -3.2
pH Growth at pH6 and (C) Trisodium citrate -0.6 +0.0 -5.1 +0.3 +0.0
micoeukaryotes C.elegans, mixed culture-2 +0.1 +0.0 -2.1 -0.4 -3.0
biofilm mediium pdms biofilm mediium PDMS; 24 hours +0.2 -0.1 -1.5 -0.1 -3.8
carbon source 3-methyl-1-butanol 0.1 vol% (C) -5.3 -0.0 -0.3 -0.3 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +0.1 -6.1 -0.3 +1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -0.2 -4.6 -0.1 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +0.2 -4.6 -0.6 +0.5
phage P. putida PUT10 MOI 10 -2.9 +0.2 -2.1 +0.2 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 -0.1 -5.2 -0.6 +2.1
phage P. putida South MOI 10 -2.0 -0.1 -2.7 -0.3 +1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 -0.1 -5.9 -0.5 +3.1
carbon source ferulate (C); with MOPS +1.9 -0.3 -1.0 -0.4 -3.2
temperature shift Temperature shift 10_to_25; with MOPS -0.1 -0.0 -3.3 -0.2 +1.9
carbon source ferulate (C); with MOPS +2.7 -0.3 +0.3 -0.3 -3.1
carbon source ferulate (C); with MOPS +2.6 +0.4 +1.2 -0.5 -3.3
temperature shift Temperature shift 10_to_30 -0.8 -0.1 -1.7 +0.1 +3.2
pH pH 5 -0.4 +0.3 +1.9 -0.5 +2.6
carbon source Delta-Decalactone (C) +1.7 -0.3 -1.7 -0.0 +4.8
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