Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4514 and PP_4515 are separated by 32 nucleotidesPP_4515 and PP_4516 are separated by 151 nucleotidesPP_4516 and PP_4517 are separated by 243 nucleotidesPP_4517 and PP_4518 are separated by 7 nucleotides PP_4514: PP_4514 - putative esterase of the alpha-beta hydrolase superfamily, at 5,126,448 to 5,128,634 _4514 PP_4515: PP_4515 - Transcriptional regulator, MarR family, at 5,128,667 to 5,129,104 _4515 PP_4516: PP_4516 - ATP-dependent DNA 3, at 5,129,256 to 5,131,403 _4516 PP_4517: PP_4517 - conserved protein of unknown function, at 5,131,647 to 5,132,234 _4517 PP_4518: PP_4518 - conserved protein of unknown function, at 5,132,242 to 5,132,607 _4518
Group Condition PP_4514 PP_4515 PP_4516 PP_4517 PP_4518
phage P. put South MOI 10 -0.3 -1.3 -0.0 -6.9 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +0.0 -0.1 -6.5 -0.8
carbon source Trisodium citrate (C) +0.2 -0.6 -0.3 -5.3 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -0.1 -0.1 -5.9 -0.5
phage P. put PUT 10 MOI 0.1 -0.1 -2.6 -0.0 -3.4 -0.2
carbon source Vanillin (C) -0.2 -4.2 +0.1 -1.8 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 +0.3 +0.3 -5.6 -0.8
temperature shift Temperature shift 30_to_4 -0.1 -0.1 -0.3 -5.5 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.0 +0.4 +0.1 -6.1 -0.3
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.1 -5.3 -0.0 -0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.0 +0.1 -0.1 -5.2 -0.6
pH Growth at pH6 and (C) Trisodium citrate -0.2 -0.6 +0.0 -5.1 +0.3
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -0.2 -1.4 -0.0 -3.5 -0.1
phage P. putida South MOI 10 -0.2 -2.0 -0.1 -2.7 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -0.0 -0.2 -4.6 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 +0.3 +0.2 -4.6 -0.6
phage P. putida South MOI 1 +0.0 -2.1 -0.1 -2.4 -0.2
carbon source Vanillin (C) -0.3 -3.5 +0.0 -0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.2 +0.3 -4.2 -0.6
phage P. putida PUT10 MOI 10 +0.2 -2.9 +0.2 -2.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -0.9 -0.2 -3.5 +0.2
phage PUT8 MOI 0.1 +0.3 -1.9 +0.1 -1.9 -0.7
stress R2A with Fusaric 480 ug/mL -1.6 +2.3 -0.1 -0.9 -0.1
stress R2A with Fusaric 480 ug/mL -1.7 +2.2 -0.1 -0.8 +0.1
stress R2A with Fusaric 480 ug/mL -1.6 +2.5 -0.4 -0.6 +0.1
stress R2A with Fusaric 480 ug/mL -1.8 +2.3 -0.1 -0.3 -0.1
stress R2A with Fusaric 480 ug/mL -1.8 +2.3 +0.0 -0.4 +0.1
carbon source ferulate (C); with MOPS -1.3 +2.7 -0.3 +0.3 -0.3
stress R2A with Fusaric 480 ug/mL -2.1 +2.4 -0.1 +0.5 +0.4
carbon source ferulate (C); with MOPS -0.6 +2.6 +0.4 +1.2 -0.5
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