Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4497 and PP_4498 overlap by 14 nucleotidesPP_4498 and PP_4499 overlap by 37 nucleotidesPP_4499 and PP_4500 overlap by 23 nucleotidesPP_4500 and PP_4501 are separated by 67 nucleotides PP_4497: PP_4497 - conserved protein of unknown function, at 5,112,677 to 5,113,444 _4497 PP_4498: PP_4498 - Segregation and condensation protein A, at 5,113,431 to 5,114,318 _4498 PP_4499: PP_4499 - putative maturation enzyme, at 5,114,282 to 5,114,947 _4499 PP_4500: PP_4500 - TrpH family protein, at 5,114,925 to 5,115,785 _4500 PP_4501: PP_4501 - Probable intracellular septation protein A, at 5,115,853 to 5,116,446 _4501
Group Condition PP_4497 PP_4498 PP_4499 PP_4500 PP_4501
nitrogen source 2,6-diaminopimelic (N) -1.0 -0.5 -0.8 -0.8 N.D.
temperature shift Temperature shift 30_to_4; with MOPS -0.7 -0.3 -1.0 -1.0 N.D.
phage PUT8 MOI 0.1 -0.5 -0.5 -1.3 -0.4 N.D.
phage P. put South MOI 1 -0.9 -0.2 -0.6 -0.8 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.0 -0.4 -2.3 +0.2 N.D.
phage P. putida South MOI 0.1 -0.6 -0.2 -1.1 -0.4 N.D.
nitrogen source Propiolactam (N) -0.5 -0.2 -0.5 -1.1 N.D.
pH Growth at pH6 and (C) D-Glucose -1.1 -0.0 -0.7 -0.4 N.D.
phage P. putida South MOI 1 -0.7 -0.3 -0.7 -0.6 N.D.
phage P. putida PUT10 MOI 10 -0.8 -0.1 -0.7 -0.6 N.D.
phage P. put PUT 10 MOI 1 -0.8 -0.5 -0.5 -0.4 N.D.
phage P. putida PUT10 MOI 10 -0.8 -0.4 -0.6 -0.2 N.D.
nitrogen source 2,6-diaminopimelic (N) -0.8 -0.4 -0.9 +0.1 N.D.
carbon source Delta-Decalactone (C) -0.5 -0.6 -1.0 +0.1 N.D.
phage P. putida Missley MOI 0.1 -0.2 -0.4 -0.5 -0.9 N.D.
phage P. put PUT 10 MOI 10 -0.9 -0.2 -0.9 +0.0 N.D.
carbon source 1,3-Hexanediol (C) -0.1 -0.3 +0.2 -1.6 N.D.
temperature Growth at 30C; with MOPS -0.3 -0.3 -1.5 +0.3 N.D.
stress MOPS minimal media_Glucose20mM with Chloride 200 mM +0.1 -0.0 +0.1 -1.7 N.D.
carbon source 2-Methylbutanoic (C) -0.1 +0.1 +0.3 -1.9 N.D.
carbon source Delta-Nonalactone (C) -0.5 -0.6 -0.5 +0.5 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.6 +0.3 -1.0 +0.2 N.D.
nitrogen source D-2-Aminobutyric (N) +0.2 -0.0 +0.8 -1.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.6 -0.9 +1.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 +0.1 +0.6 -1.3 N.D.
carbon source Trisodium citrate (C) -0.1 +0.2 -0.8 +0.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 -0.1 -1.0 +1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +0.4 +0.6 +1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +0.2 +1.7 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.1 +1.7 +1.8 N.D.
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