Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4494 and PP_4495 are separated by 138 nucleotidesPP_4495 and PP_4496 are separated by 638 nucleotidesPP_4496 and PP_4497 are separated by 265 nucleotidesPP_4497 and PP_4498 overlap by 14 nucleotides PP_4494: PP_4494 - putative LysR-type transcriptional activator protein, at 5,108,264 to 5,109,148 _4494 PP_4495: PP_4495 - aromatic amino acid transport protein, at 5,109,287 to 5,110,705 _4495 PP_4496: PP_4496 - 23S rRNA pseudouridine 2605 synthase, at 5,111,344 to 5,112,411 _4496 PP_4497: PP_4497 - conserved protein of unknown function, at 5,112,677 to 5,113,444 _4497 PP_4498: PP_4498 - Segregation and condensation protein A, at 5,113,431 to 5,114,318 _4498
Group Condition PP_4494 PP_4495 PP_4496 PP_4497 PP_4498
phage P. put South MOI 1 -0.2 -1.4 N.D. -0.9 -0.2
phage P. put PUT 10 MOI 10 -0.4 -1.2 N.D. -0.9 -0.2
phage P. putida PUT10 MOI 10 -0.2 -1.2 N.D. -0.8 -0.4
phage P. put South MOI 1 -0.1 -1.2 N.D. -0.7 -0.5
carbon source L-Phenylalanine 5 mM (C) +0.2 -2.5 N.D. -0.0 -0.1
phage P. put PUT 10 MOI 1 -0.1 -1.1 N.D. -0.8 -0.5
phage P. putida South MOI 1 -0.1 -1.4 N.D. -0.7 -0.3
phage P. putida South MOI 0.1 -0.2 -1.3 N.D. -0.4 -0.5
phage P. putida PUT10 MOI 10 -0.1 -1.4 N.D. -0.8 -0.1
phage PUT8 MOI 0.1 -0.4 -1.0 N.D. -0.5 -0.5
phage P. putida PUT10 MOI 1 -0.2 -1.4 N.D. -0.3 -0.5
nitrogen source 2,6-diaminopimelic (N) -0.6 -0.2 N.D. -1.0 -0.5
phage P. put PUT 10 MOI 0.1 -0.4 -1.0 N.D. -0.4 -0.5
carbon source L-Phenylalanine 5 mM (C) +0.1 -2.6 N.D. +0.4 -0.1
carbon source L-Phenylalanine 5 mM (C) +0.2 -2.7 N.D. +0.2 +0.0
phage P. putida PUT10 MOI 1 -0.2 -1.2 N.D. -0.3 -0.5
phage P. put PUT 10 MOI 1 -0.1 -1.3 N.D. -0.6 -0.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 -2.3 N.D. +0.4 +0.0
phage P. putida PUT10 MOI 0.1 -0.1 -1.1 N.D. -0.5 -0.4
phage P. putida South MOI 0.1 -0.2 -1.1 N.D. -0.6 -0.2
phage P. put PUT 10 MOI 10 -0.2 -1.2 N.D. -0.4 -0.3
carbon source Delta-Decalactone (C) -0.3 -0.0 N.D. -1.1 -0.7
phage P. put South MOI 0.1 -0.2 -1.0 N.D. -0.5 -0.3
phage PUT8 MOI 0.1 -0.3 -1.0 N.D. -0.3 -0.4
phage P. put South MOI 0.1 -0.3 -1.1 N.D. -0.2 -0.3
phage P. put PUT 10 MOI 0.1 -0.1 -0.9 N.D. -0.5 -0.2
phage PUT8 MOI 10 -0.2 -0.7 N.D. -0.4 -0.3
carbon source D-Lysine 10 mM (C) -1.3 -0.2 N.D. -0.2 +0.2
carbon source D-Lysine 10 mM (C) -1.4 -0.0 N.D. +0.7 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 +0.2 N.D. +0.6 +0.6
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