Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_4483 and PP_4484 are separated by 22 nucleotidesPP_4484 and PP_4485 overlap by 4 nucleotidesPP_4485 and PP_4486 are separated by 88 nucleotidesPP_4486 and PP_4487 are separated by 535 nucleotides PP_4483: PP_4483 - histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit, at 5,093,720 to 5,094,484 _4483 PP_4484: PP_4484 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,094,507 to 5,095,205 _4484 PP_4485: PP_4485 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,095,202 to 5,095,891 _4485 PP_4486: PP_4486 - lysine / arginine / ornithine ABC transporter - periplasmic binding protein, at 5,095,980 to 5,096,765 _4486 PP_4487: PP_4487 - acetyl-CoA synthetase, at 5,097,301 to 5,099,391 _4487
Group Condition PP_4483 PP_4484 PP_4485 PP_4486 PP_4487
carbon source L-Arginine (C) -2.1 -2.2 -3.1 -2.7 -0.0
nitrogen source L-Arginine (N) -2.2 -2.3 -2.6 -2.4 -0.1
nitrogen source L-Arginine (N) -2.3 -2.3 -2.4 -2.4 -0.1
carbon source Acetate Carbon Source (20mM) +0.1 +0.1 +0.0 +0.0 -4.8
carbon source Acetate Carbon Source (20mM) +0.2 +0.1 -0.1 +0.0 -4.8
carbon source L-Lysine (C) -0.7 -1.0 -0.7 -1.4 +0.1
carbon source Acetate Carbon Source (5mM) +0.0 +0.0 -0.2 +0.2 -3.6
carbon source 2,3-Butanediol (C) -0.0 -0.0 +0.3 -0.1 -3.7
carbon source Acetate Carbon Source (5mM) -0.1 +0.0 +0.1 +0.1 -3.5
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 -0.2 +0.0 -0.1 -2.6
carbon source acetate (C) +0.4 +0.3 +0.0 +0.3 -4.0
carbon source Ethanol (C) -0.3 -0.1 -0.1 -0.0 -2.5
carbon source DL-2-Aminoadipic 10 mM (C) -0.1 -0.2 -0.1 +0.1 -2.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -0.6 -0.7 -0.8 +0.2
nitrogen source D-2-Aminobutyric (N) +0.2 +0.1 -0.6 -0.2 -1.9
carbon source Ethanol (C) +0.0 -0.0 +0.1 +0.0 -2.5
carbon source Ethanol (C) +0.1 +0.1 +0.1 -0.1 -2.5
nitrogen source D-2-Aminobutyric (N) +0.1 -0.1 -0.4 +0.3 -1.9
nitrogen source Propandiamine (N) +0.6 +0.5 +0.8 +0.6 -2.2
stress Growth with Chloride 500 mM; with MOPS +0.9 +0.5 +0.6 +0.5 -0.2
carbon source L-Isoleucine (C) +0.7 +0.7 +0.6 +0.7 -0.1
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.3 +0.1 +0.2 +0.5 +1.7
carbon source L-Alanine (C) +1.2 +1.9 +1.9 +1.5 +0.1
nitrogen source DL-2-Aminobutyric (N) +1.6 +2.6 +2.4 +2.6 -1.6
nitrogen source DL-2-Aminobutyric (N) +1.6 +2.5 +2.5 +2.6 -1.6
micoeukaryotes Dictyostellum sp.mixed culture-1 +2.1 +2.1 +2.0 +1.8 -0.1
micoeukaryotes C.elegans, mixed culture-1 +2.0 +2.4 +2.1 +2.2 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 +2.0 +2.4 +2.1 +2.3 -0.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 +2.4 +2.4 +2.4 +2.2 -0.1
micoeukaryotes C.elegans, mixed culture-2 +2.9 +2.9 +2.9 +2.8 -0.2
remove
PP_4483
plot		 remove
PP_4484
plot		 remove
PP_4485		 remove
PP_4486
plot		 remove
PP_4487
plot