Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4477 and PP_4478 are separated by 23 nucleotidesPP_4478 and PP_4479 are separated by 0 nucleotidesPP_4479 and PP_4480 are separated by 78 nucleotidesPP_4480 and PP_4481 are separated by 147 nucleotides PP_4477: PP_4477 - N-succinylarginine dihydrolase, at 5,085,973 to 5,087,322 _4477 PP_4478: PP_4478 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 5,087,346 to 5,088,809 _4478 PP_4479: PP_4479 - arginine N-succinyltransferase, subunit beta, at 5,088,810 to 5,089,838 _4479 PP_4480: PP_4480 - arginine N-succinyltransferase, subunit alpha, at 5,089,917 to 5,090,936 _4480 PP_4481: PP_4481 - Succinylornithine transaminase/acetylornithine aminotransferase, at 5,091,084 to 5,092,304 _4481
Group Condition PP_4477 PP_4478 PP_4479 PP_4480 PP_4481
carbon source L-Arginine (C) -5.6 -4.2 -3.5 -2.1 -4.3
nitrogen source L-Arginine (N) -5.1 -4.1 -4.3 -0.6 -3.8
nitrogen source L-Arginine (N) -4.9 -4.2 -3.1 -0.8 -3.1
pH Growth at pH7 and (C) Trisodium citrate -1.2 -0.0 -3.4 -2.0 -1.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 -1.2 -0.7 -1.3 -1.8
carbon source ferulate (C); with MOPS -1.5 -0.4 -0.5 -2.1 -1.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.3 -1.3 -0.6 -1.3 -1.5
temperature Growth at 25C +0.0 -0.0 -1.6 -3.5 -0.9
temperature shift Temperature shift 30_to_25; with MOPS -1.1 -0.3 -1.3 -2.2 -1.0
carbon source ferulate (C); with MOPS -1.1 -0.4 -0.1 -1.7 -2.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 -1.4 -0.2 -1.2 -1.9
nitrogen source Hippuric (N) -0.5 -0.4 -0.1 -2.8 -1.9
temperature shift Temperature shift 30_to_25 -0.9 -0.1 -1.4 -2.4 -0.8
micoeukaryotes C.elegans, mixed culture-1 -0.1 -1.5 +0.5 -2.0 -2.6
nitrogen source nitrite (N) -0.9 +0.1 -1.0 -2.7 -1.0
nitrogen source Hippuric (N) -0.3 -0.7 -0.5 -3.0 -0.9
temperature shift Temperature shift 30_to_25; with MOPS -0.7 -0.0 -2.4 -1.8 -0.5
nitrogen source NAG (N); with MOPS -0.5 -0.5 -2.5 -1.4 -0.4
carbon source Mucic (C) -0.4 -1.0 -0.3 -2.1 -1.3
nitrogen source L-Leucine (N) -1.6 -0.6 -0.0 -2.2 -0.7
carbon source acetate (C) -0.4 -0.3 -0.9 -1.8 -1.8
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -0.4 -1.4 -2.0 -0.9
nitrogen source DL-2-Aminobutyric (N) -0.5 -0.8 +0.2 -2.8 -1.0
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.6 -1.1 +0.3 -1.7 -1.5
nitrogen source DL-2-Aminobutyric (N) -0.3 -0.4 +0.7 -3.0 -1.0
micoeukaryotes C.elegans, mixed culture-2 +0.5 -1.3 +0.9 -1.5 -2.1
nitrogen source Propandiamine (N) -1.3 +0.6 +1.8 -0.6 -1.2
nitrogen source Propandiamine (N) -1.6 +0.5 +2.7 +0.1 -0.9
carbon source L-Lysine (C) +1.1 +1.0 +0.8 +3.0 +1.4
carbon source L-Lysine 10 mM (C) +1.0 +0.8 +1.0 +4.0 +1.7
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