Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5693 and PP_4470 are separated by 69 nucleotidesPP_4470 and PP_4471 are separated by 107 nucleotidesPP_4471 and PP_t56 are separated by 396 nucleotidesPP_t56 and PP_t55 are separated by 73 nucleotides PP_5693: PP_5693 - conserved protein of unknown function, at 5,076,540 to 5,076,809 _5693 PP_4470: PP_4470 - putative transcriptional regulator (Arc domain-containing), at 5,076,879 to 5,077,205 _4470 PP_4471: PP_4471 - Magnesium transporter, at 5,077,313 to 5,078,755 _4471 PP_t56: PP_t56 - tRNA-Arg, at 5,079,152 to 5,079,228 _t56 PP_t55: PP_t55 - tRNA-Arg, at 5,079,302 to 5,079,378 _t55
Group Condition PP_5693 PP_4470 PP_4471 PP_t56 PP_t55
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.4 -3.2 -1.9 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -0.9 -4.0 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-1 -1.4 -2.0 -1.0 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.5 -2.6 N.D. N.D.
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.2 -0.3 -3.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -1.0 -2.5 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 +0.5 -4.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -1.2 -2.4 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.2 -1.2 -2.6 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.8 -1.5 -1.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -1.1 -2.3 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 -1.3 -1.0 -1.4 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -0.8 -2.6 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.9 -1.0 -1.6 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.6 -2.3 -0.5 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -1.3 -1.6 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8 -0.9 -1.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4 -0.8 -2.1 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.8 -1.8 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -1.4 -1.3 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 +0.1 -3.4 N.D. N.D.
pH Valerolactone (C) pH 6.5 -0.9 -2.4 +0.3 N.D. N.D.
stress Growth with Chloride 500 mM; with MOPS +0.1 -0.3 -2.8 N.D. N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.6 +0.5 -2.4 N.D. N.D.
stress Growth with Chloride 500 mM; with MOPS +0.3 +0.2 -2.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +0.9 -3.8 N.D. N.D.
nitrogen source nitrate (N) -0.1 +1.0 -2.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +0.4 -2.4 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +0.8 -2.2 N.D. N.D.
carbon source Delta-Decalactone (C) +0.6 +1.1 -2.0 N.D. N.D.
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