Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4457	PP_4458	PP_4459	PP_4460	PP_4461
nitrogen source	NAG (N); with MOPS	+0.2	-0.3	+0.2	-1.8	-0.2
pH	pH 7	-0.3	-0.2	-0.5	-0.2	-0.7
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.1	-0.2	-0.2	-0.5	-0.7
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.3	-0.3	-0.1	-0.4	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.1	-0.1	-0.3	-0.4	-0.6
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.1	-0.2	-0.6	-0.3	-0.3
carbon source	L-Alanine (C)	-0.3	-0.1	-0.3	-0.4	-0.4
pH	pH 6	-0.1	-0.2	+0.1	-0.6	-0.6
carbon source	D-Glucose (C)	-0.4	-0.3	+0.0	-0.5	-0.1
nitrogen source	no extra (N); with MOPS	-0.1	+0.0	-0.3	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	-0.3	-0.5	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.2	-0.2	-0.9	+0.1
carbon source	ferulate (C); with MOPS	+0.1	-0.1	+0.2	-1.0	+0.2
nitrogen source	Propiolactam (N)	-0.2	-0.2	-0.3	+0.2	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	+0.1	+0.3	-0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.1	-0.5	+0.3	+0.3
carbon source	Trisodium citrate (C)	+0.0	+0.1	+0.1	-0.7	+0.4
carbon source	Crotonic (C)	-0.1	-0.1	-0.3	-0.2	+0.7
carbon source	5-Aminovaleric 10 mM (C)	-0.2	-0.2	-0.1	+0.4	+0.4
carbon source	Valerolactone (C)	-0.1	-0.2	+0.2	+0.8	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.2	+0.2	+0.3	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	+0.3	+0.4	+0.1	+0.3
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.3	+0.3	+0.3	+0.1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.5	+0.2	+0.1	+0.0	+0.6
phage	P. putida Sci small MOI 0.1	+0.1	+0.4	+0.2	+0.4	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5	+0.1	+0.3	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	+0.3	+0.5	+0.6
phage	P. putida Sci small MOI 0.1	+0.1	+0.5	+0.6	+0.3	+0.4
phage	P. putida PUT 7 MOI 1	+0.7	+0.7	+0.6	+0.3	+0.8
phage	P. putida Missley MOI 0.1	+0.7	+0.7	+1.0	+0.9	+0.9