Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4394 and PP_4395 are separated by 164 nucleotidesPP_4395 and PP_4396 are separated by 49 nucleotidesPP_4396 and PP_4397 are separated by 79 nucleotidesPP_4397 and PP_4398 are separated by 93 nucleotides PP_4394: PP_4394 - flagella basal body P-ring formation protein, at 4,985,759 to 4,986,511 _4394 PP_4395: PP_4395 - Negative regulator of flagellin synthesis FlgM, at 4,986,676 to 4,986,990 _4395 PP_4396: PP_4396 - conserved protein of unknown function, at 4,987,040 to 4,987,507 _4396 PP_4397: PP_4397 - Flagellar brake protein YcgR, at 4,987,587 to 4,988,330 _4397 PP_4398: PP_4398 - Major facilitator family transporter, at 4,988,424 to 4,989,758 _4398
Group Condition PP_4394 PP_4395 PP_4396 PP_4397 PP_4398
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.0 N.D. -4.2 +0.9 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.7 N.D. -4.8 -0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -3.2 N.D. -2.8 -0.2 +0.1
micoeukaryotes C.elegans, mixed culture-1 -2.0 N.D. -3.4 +0.1 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.3 N.D. -2.8 -0.0 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.2 N.D. -3.2 +0.6 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.7 N.D. -3.2 +0.0 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 N.D. -2.3 -0.3 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -2.2 N.D. -1.9 -0.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 N.D. -3.3 +0.2 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.6 N.D. -1.8 -0.1 -0.9
micoeukaryotes Acanthamoeba sp., muxed culture-2 -2.1 N.D. -1.3 -0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.5 N.D. -1.9 +0.0 +0.2
micoeukaryotes C.elegans, mixed culture-2 -2.4 N.D. -0.7 -0.2 -1.0
carbon source L-Phenylalanine 5 mM (C) -2.2 N.D. -2.0 -0.0 +0.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.9 N.D. -3.5 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.1 N.D. -2.2 -0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.4 N.D. -3.0 +0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.1 N.D. -1.5 -0.1 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7 N.D. -2.5 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.9 N.D. -2.0 +0.5 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.0 N.D. -1.4 +0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.1 N.D. -1.5 -0.1 +0.4
nitrogen source Propiolactam (N) +1.8 N.D. +1.4 -0.6 +0.3
dilutelb LB 0.1x with 55.5 mM D-Glucose +1.8 N.D. +2.2 -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.0 N.D. +1.7 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.0 N.D. +1.2 +0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.0 N.D. +2.0 +0.4 -0.2
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant +2.0 N.D. +2.3 +0.0 -0.0
stress Geraniol 1 vol% +3.8 N.D. +3.5 -0.4 -0.7
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