Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4389 and PP_4390 are separated by 12 nucleotidesPP_4390 and PP_4391 are separated by 2 nucleotidesPP_4391 and PP_4392 are separated by 321 nucleotidesPP_4392 and PP_4393 are separated by 52 nucleotides PP_4389: PP_4389 - Flagellar basal-body rod modification protein FlgD, at 4,981,980 to 4,982,681 _4389 PP_4390: PP_4390 - flagellar basal-body rod protein FlgC, at 4,982,694 to 4,983,137 _4390 PP_4391: PP_4391 - flagellar basal-body rod protein FlgB, at 4,983,140 to 4,983,550 _4391 PP_4392: PP_4392 - chemotaxis protein methyltransferase, at 4,983,872 to 4,984,699 _4392 PP_4393: PP_4393 - putative chemotaxis protein, at 4,984,752 to 4,985,681 _4393
Group Condition PP_4389 PP_4390 PP_4391 PP_4392 PP_4393
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.1 -2.6 -2.7 -2.3 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.4 -3.5 -1.6 -1.4 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.4 -1.8 -2.2 -1.6 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.5 -1.8 -2.0 -2.5 -0.4
carbon source L-Phenylalanine 5 mM (C) -1.4 -2.0 -1.9 -1.4 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.5 -1.9 -1.9 -1.5 -0.4
micoeukaryotes Acanthamoeba sp., muxed culture-1 -1.8 -1.8 -2.4 -0.7 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.9 -1.9 -2.2 -0.5 -0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.5 -1.7 -2.0 -1.0 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.7 -1.6 -1.8 -1.3 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.5 -1.9 -2.1 -1.3 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.6 -1.4 -1.6 -1.4 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.1 -1.3 -1.7 -1.6 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.3 -1.7 -1.9 -1.0 -0.3
temperature shift Temperature shift 30_to_25 +1.2 +2.1 +2.0 -1.9 +0.0
temperature shift Temperature shift 30_to_25; with MOPS +1.2 +1.7 +2.0 -1.4 -0.3
temperature shift Temperature shift 30_to_25 +1.4 +1.8 +2.0 -2.1 +0.1
temperature shift Temperature shift 30_to_25; with MOPS +1.2 +1.7 +1.7 -1.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.3 +1.9 +1.7 -0.7 -0.7
temperature shift Temperature shift 30_to_25; with MOPS +1.2 +1.9 +2.0 -1.3 -0.3
temperature shift Temperature shift 30_to_25 +1.3 +1.6 +1.9 -1.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.2 +1.6 +2.2 -0.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.4 +2.2 +1.9 -0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.5 +2.2 +2.1 -0.5 -0.2
dilutelb LB 0.1x with 55.5 mM D-Glucose +2.1 +2.2 +2.0 -0.3 +0.2
nitrogen source DL-2-Aminobutyric (N) +1.6 +2.3 +2.1 +0.3 +0.2
nitrogen source Propiolactam (N) +2.1 +2.6 +2.3 -0.1 -0.3
stress 1-Pentanol 0.3 vol% +1.8 +2.1 +2.0 +1.4 +0.4
stress Geraniol 1 vol% +3.6 +3.7 +3.7 -0.7 -0.4
stress 3-methyl-1-butanol 0.4 vol% +2.3 +2.7 +2.5 +1.8 +0.9
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