Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4379 and PP_4380 are separated by 416 nucleotidesPP_4380 and PP_4381 are separated by 13 nucleotidesPP_4381 and PP_4382 are separated by 12 nucleotidesPP_4382 and PP_4383 are separated by 11 nucleotides PP_4379: PP_4379 - Beta-ketoacyl-acyl-carrier-protein synthase I, at 4,970,636 to 4,971,565 _4379 PP_4380: PP_4380 - Flagellar hook-associated protein FlgL, at 4,971,982 to 4,973,547 _4380 PP_4381: PP_4381 - Flagellar hook-associated protein FlgK, at 4,973,561 to 4,975,603 _4381 PP_4382: PP_4382 - Peptidoglycan hydrolase FlgJ, at 4,975,616 to 4,976,770 _4382 PP_4383: PP_4383 - Flagellar P-ring protein, at 4,976,782 to 4,977,891 _4383
Group Condition PP_4379 PP_4380 PP_4381 PP_4382 PP_4383
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 -4.1 -4.2 -3.1 -3.8
biofilm mediium pdms biofilm mediium PDMS; 24 hours -1.3 -3.2 -3.3 -3.2 -4.4
biofilm mediium pdms biofilm mediium PDMS; 24 hours -0.4 -3.5 -3.7 -3.2 -3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.1 -2.8 -2.7 -2.5 -3.6
micoeukaryotes C.elegans, mixed culture-1 -3.5 -2.4 -2.1 -2.5 -3.0
micoeukaryotes C.elegans, mixed culture-2 -2.3 -2.4 -1.9 -2.2 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.2 -1.9 -3.1 -2.0 -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.8 -1.7 -2.3 -2.2 -1.7
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.8 -2.1 -2.8 -2.4 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.2 -2.1 -2.4 -1.9 -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.9 -1.8 -1.8 -1.6 -2.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.5 -2.5 -2.3 -1.9 -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -3.5 -2.1 -1.3 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.2 -1.5 -1.5 -1.3 -3.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.6 -1.8 -1.5 -1.8 -3.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1 -2.6 -2.0 -2.2 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.8 -1.3 -1.8 -1.4 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.3 -2.4 -2.0 -1.9 -2.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.3 -1.6 -1.4 -1.5 -2.1
carbon source L-Phenylalanine 5 mM (C) -0.8 -1.9 -2.2 -1.7 -2.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.4 -2.0 -2.3 -1.5 -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.1 -1.8 -1.8 -1.8 -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.6 -1.8 -2.0 -1.7 -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.2 +1.3 +1.7 +1.7 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.0 +1.5 +1.8 +2.0 +1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.0 +1.5 +1.6 +1.8 +2.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.0 +1.5 +1.9 +1.8 +2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.2 +1.6 +2.0 +2.0 +2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 +1.7 +1.9 +2.1 +2.4
stress Geraniol 1 vol% +0.7 +3.3 +3.4 +3.8 +4.0
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