Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4377 and PP_4378 are separated by 74 nucleotidesPP_4378 and PP_4379 are separated by 393 nucleotidesPP_4379 and PP_4380 are separated by 416 nucleotidesPP_4380 and PP_4381 are separated by 13 nucleotides PP_4377: PP_4377 - putative Flagellin FlaG, at 4,967,760 to 4,968,104 _4377 PP_4378: PP_4378 - flagellin, filament structural protein, at 4,968,179 to 4,970,242 _4378 PP_4379: PP_4379 - Beta-ketoacyl-acyl-carrier-protein synthase I, at 4,970,636 to 4,971,565 _4379 PP_4380: PP_4380 - Flagellar hook-associated protein FlgL, at 4,971,982 to 4,973,547 _4380 PP_4381: PP_4381 - Flagellar hook-associated protein FlgK, at 4,973,561 to 4,975,603 _4381
Group Condition PP_4377 PP_4378 PP_4379 PP_4380 PP_4381
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -4.0 -1.1 -4.1 -4.2
micoeukaryotes C.elegans, mixed culture-1 -0.6 -2.5 -3.5 -2.4 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -2.6 -2.1 -2.8 -2.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -2.5 -2.2 -1.9 -3.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.8 -1.5 -2.5 -2.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -2.2 -0.9 -3.5 -2.1
micoeukaryotes C.elegans, mixed culture-2 -0.1 -2.6 -2.3 -2.4 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.6 -3.8 -1.3 -1.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.0 -2.2 -1.7 -2.0 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.3 -2.0 -1.1 -2.6 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 -1.9 -2.8 -1.7 -2.3
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.4 -2.0 -0.8 -2.1 -2.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.0 -1.6 -1.8 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 -2.3 -1.4 -2.0 -2.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -1.7 -2.3 -1.6 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.0 -2.1 -1.2 -2.1 -2.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.9 -1.9 -1.8 -1.8
carbon source L-Phenylalanine 5 mM (C) -1.2 -1.6 -0.8 -1.9 -2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.8 -2.1 -0.3 -2.4 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -1.9 -2.1 -1.8 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -1.5 -2.4 -1.6 -1.5
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.1 -1.6 -3.4 -1.2 -1.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.6 -1.5 -3.0 -1.2 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.4 -2.0 -1.6 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -1.5 -2.1 -1.8 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 -0.9 -4.3 -1.0 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.5 -3.2 +1.3 +1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.6 -2.0 +1.5 +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +1.7 -2.0 +1.5 +1.9
stress Geraniol 1 vol% +1.6 +2.5 +0.7 +3.3 +3.4
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