Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_4357 and PP_4358 are separated by 29 nucleotidesPP_4358 and PP_4359 are separated by 9 nucleotidesPP_4359 and PP_4361 are separated by 156 nucleotidesPP_4361 and PP_4362 are separated by 71 nucleotides PP_4357: PP_4357 - C-ring protein of the flagellar basal body, at 4,948,860 to 4,949,345 _4357 PP_4358: PP_4358 - flagellar synthesis, switching and energizing component, at 4,949,375 to 4,950,343 _4358 PP_4359: PP_4359 - Flagellar protein FliL, at 4,950,353 to 4,950,850 _4359 PP_4361: PP_4361 - Flagellar hook-length control protein FliK, at 4,951,007 to 4,952,272 _4361 PP_4362: PP_4362 - conserved protein of unknown function, at 4,952,344 to 4,952,682 _4362
Group Condition PP_4357 PP_4358 PP_4359 PP_4361 PP_4362
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -4.7 -1.9 -2.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. -2.5 -1.8 -1.0 -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -3.7 -2.2 -3.2 +1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. -2.5 -1.2 -1.9 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -2.5 -0.9 -3.1 -0.5
micoeukaryotes C.elegans, mixed culture-2 N.D. -2.0 -1.1 -3.0 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -1.9 -1.4 -1.8 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -2.1 -1.0 -1.8 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -1.8 -1.4 -2.2 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -2.0 -0.7 -1.2 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.9 -0.9 -2.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -1.7 -0.9 -1.9 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -2.0 -0.7 -1.0 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -2.3 -0.8 -1.1 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -1.7 -1.0 -1.6 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -2.1 -1.2 -1.9 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. -2.7 -0.9 -1.4 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -2.3 -1.4 -1.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -2.3 -1.0 -1.1 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -2.2 -1.3 -1.7 +0.1
nitrogen source 2,6-diaminopimelic (N) N.D. +0.6 -0.0 +0.2 -4.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +1.6 +1.2 +1.4 -2.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.6 +1.2 +1.6 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.8 +1.2 +1.6 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.8 +1.5 +1.2 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +2.0 +1.7 +1.6 -0.6
stress 3-methyl-1-butanol 0.4 vol% N.D. +2.5 +1.8 +2.6 -1.9
dilutelb LB 0.1x with 55.5 mM D-Glucose N.D. +2.4 +1.6 +1.9 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +1.9 +1.4 +1.8 +0.4
stress Geraniol 1 vol% N.D. +4.2 +2.8 +3.7 +1.5
remove
PP_4357
plot		 remove
PP_4358
plot		 remove
PP_4359		 remove
PP_4361
plot		 remove
PP_4362
plot