Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4354 and PP_4355 are separated by 21 nucleotidesPP_4355 and PP_4356 overlap by 1 nucleotidesPP_4356 and PP_4357 are separated by 12 nucleotidesPP_4357 and PP_4358 are separated by 29 nucleotides PP_4354: PP_4354 - flagellar export apparatus subunit, at 4,947,367 to 4,947,636 _4354 PP_4355: PP_4355 - flagellar export apparatus subunit, at 4,947,658 to 4,948,413 _4355 PP_4356: PP_4356 - Flagellar protein FliO, at 4,948,413 to 4,948,847 _4356 PP_4357: PP_4357 - C-ring protein of the flagellar basal body, at 4,948,860 to 4,949,345 _4357 PP_4358: PP_4358 - flagellar synthesis, switching and energizing component, at 4,949,375 to 4,950,343 _4358
Group Condition PP_4354 PP_4355 PP_4356 PP_4357 PP_4358
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -6.9 -4.7 -4.4 N.D. -3.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 -5.1 -1.8 N.D. -4.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -7.5 -1.5 -1.0 N.D. -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.5 -5.0 -2.4 N.D. -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -7.3 -1.3 -1.3 N.D. -1.3
micoeukaryotes C.elegans, mixed culture-1 -2.5 -2.5 -3.6 N.D. -2.0
carbon source L-Phenylalanine 5 mM (C) -3.9 -2.5 -1.7 N.D. -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.6 -2.6 -2.2 N.D. -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 -4.1 -1.8 N.D. -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -3.9 -1.6 -1.9 N.D. -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.2 -2.5 -2.0 N.D. -2.2
carbon source L-Phenylalanine 5 mM (C) -2.6 -1.5 -3.0 N.D. -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -2.6 -2.0 -1.9 N.D. -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -2.3 -2.2 -2.2 N.D. -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.6 -1.5 -2.9 N.D. -2.5
micoeukaryotes Acanthamoeba sp., muxed culture-1 -1.7 -3.3 -2.1 N.D. -1.2
carbon source D-Glucaric (C) -1.8 -0.9 -2.5 N.D. -3.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.5 -2.0 -2.0 N.D. -2.6
micoeukaryotes Tetrahymena sp., Mixed culture-1 -2.5 -2.6 -1.2 N.D. -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7 -1.1 -2.9 N.D. -2.1
micoeukaryotes C.elegans, mixed culture-2 -4.0 +0.5 -1.9 N.D. -2.0
nitrogen source Propiolactam (N) +2.2 +1.9 +2.0 N.D. -1.7
nitrogen source Propiolactam (N) +2.5 +2.6 +2.6 N.D. -1.1
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant +2.4 +2.3 +1.7 N.D. +1.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.2 +1.9 +2.2 N.D. +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.3 +2.1 +2.3 N.D. +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.0 +2.8 +2.3 N.D. +1.7
dilutelb LB 0.1x with 55.5 mM D-Glucose +2.1 +2.6 +1.8 N.D. +2.4
stress 3-methyl-1-butanol 0.4 vol% +2.7 +2.3 +2.5 N.D. +2.5
stress Geraniol 1 vol% +4.0 +4.3 +4.0 N.D. +4.2
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