Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4339 and PP_4340 are separated by 22 nucleotidesPP_4340 and PP_4341 are separated by 107 nucleotidesPP_4341 and PP_4342 overlap by 4 nucleotidesPP_4342 and PP_4343 are separated by 93 nucleotides PP_4339: PP_4339 - Protein phosphatase CheZ, at 4,930,184 to 4,930,972 _4339 PP_4340: PP_4340 - response regulator for chemotactic signal transduction, at 4,930,995 to 4,931,369 _4340 PP_4341: PP_4341 - RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons, at 4,931,477 to 4,932,217 _4341 PP_4342: PP_4342 - flagellar synthesis regulator, putative ATPase, at 4,932,214 to 4,933,047 _4342 PP_4343: PP_4343 - Flagellar biosynthesis protein FlhF, at 4,933,141 to 4,934,448 _4343
Group Condition PP_4339 PP_4340 PP_4341 PP_4342 PP_4343
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.7 -3.4 -3.5 -2.2
biofilm mediium pdms biofilm mediium PDMS; 24 hours -0.2 -0.9 -3.7 -3.9 -2.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -0.4 -4.1 -4.2 -2.3
biofilm mediium pdms biofilm mediium PDMS; 24 hours -0.3 -0.6 -3.6 -4.0 -2.9
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.7 -1.9 -1.8 -4.9 -2.0
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.4 -0.2 -2.2 -5.3 -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -2.5 -0.8 -4.3 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.2 -1.3 -2.4 -3.2 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 -2.6 -2.6 -1.8 -1.5
micoeukaryotes C.elegans, mixed culture-2 -0.2 -0.6 -3.1 -3.7 -1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 -2.0 -0.2 -4.6 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.0 -1.0 -2.2 -3.7 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -1.9 -2.4 -2.8 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 -0.9 -1.7 -4.1 -1.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -1.0 -1.6 -3.3 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -1.1 -1.9 -4.2 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.2 -1.5 -1.9 -2.3 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 -1.1 -1.0 -4.5 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.0 -0.9 -1.2 -4.6 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -1.6 -0.0 -4.9 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 -1.4 -2.1 -2.6 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -1.1 -1.3 -3.7 -1.2
stress Geraniol 1 vol% +0.3 -0.5 +3.5 -3.8 +1.9
nitrogen source L-Methionine (N) -0.2 -1.7 +0.9 +3.3 +1.5
temperature shift Temperature shift 30_to_25 +1.0 -3.6 +1.5 +2.7 +2.1
temperature shift Temperature shift 30_to_25; with MOPS +1.2 -2.7 +1.3 +2.4 +1.9
temperature shift Temperature shift 30_to_25 +1.4 -2.2 +1.4 +2.4 +2.0
temperature shift Temperature shift 30_to_25 +0.7 -1.5 +1.5 +2.6 +1.9
temperature shift Temperature shift 30_to_25; with MOPS +1.2 -1.8 +1.5 +2.7 +2.2
temperature shift Temperature shift 30_to_25; with MOPS +1.3 -1.1 +1.7 +2.9 +2.4
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