Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4304	PP_4305	PP_4306	PP_4307	PP_4308
nitrogen source	spermidine (N)	-5.3	+0.3	-0.0	-0.0	-0.3
nitrogen source	spermidine (N)	-4.0	-0.1	-0.1	-0.0	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.2	-0.6	-0.3	-1.9
no stress control	Growth with no stress	+0.1	+0.0	-0.6	+0.0	-2.0
nitrogen source	Propandiamine (N)	-1.5	+0.2	-1.0	-0.2	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.4	+0.2	-0.3	-0.3	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.0	-0.2	-0.2	-1.3
phage	P. putida Sci small MOI 0.1	+0.1	-0.3	-1.4	-0.2	-0.0
stress	Growth with Chloride 500 mM	-1.7	+0.2	-0.2	+0.1	+0.2
stress	Growth with Chloride 500 mM	-1.3	+0.1	-0.4	-0.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.0	+0.1	-0.2	+0.2	-1.4
temperature shift	Temperature shift 30_to_25; with MOPS	-0.2	-0.1	+0.3	+0.2	-1.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.0	+0.2	-0.4	+0.0	-1.0
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.1	+0.2	-0.2	-0.2	-0.9
stress	Growth with Chloride 500 mM	-1.4	-0.2	-0.2	-0.0	+0.6
carbon source	Myristic (C)	-0.0	+0.2	-0.7	+0.2	-0.8
pH	Growth at pH7 and (C) D-Glucose	+0.1	+0.2	-0.3	+0.1	-1.0
nitrogen source	Ammonium chloride (N)	+0.2	+0.0	+0.4	+0.0	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+0.3	+0.1	+0.4	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	+0.3	-0.6	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.3	-0.4	+0.1	+1.1
pH	Growth at pH9 and (C) Trisodium citrate	+0.1	+0.0	-0.4	-0.3	+0.9
carbon source	butyrate (C)	+0.1	+0.2	-0.5	-0.0	+0.8
nitrogen source	Urea (N); with MOPS	+0.1	+0.4	+0.6	-0.4	+0.2
nitrogen source	D-2-Aminobutyric (N)	+0.3	+0.3	-0.5	+0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	+0.5	+0.0	+0.7
temperature shift	Temperature shift 10_to_21	+0.3	-0.1	+0.3	+0.1	+0.8
nitrogen source	D-2-Aminobutyric (N)	-0.2	+0.5	+0.0	-0.0	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.1	+0.6	+0.1	+0.5
carbon source	ferulate (C); with MOPS	+0.4	+0.0	+0.2	+0.3	+1.3