Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4295 and PP_4296 are separated by 122 nucleotidesPP_4296 and PP_4297 are separated by 257 nucleotidesPP_4297 and PP_4298 are separated by 54 nucleotidesPP_4298 and PP_4299 are separated by 152 nucleotides PP_4295: PP_4295 - TetR family transcriptional regulator, at 4,885,510 to 4,886,121 _4295 PP_4296: PP_4296 - conserved exported protein of unknown function, at 4,886,244 to 4,886,684 _4296 PP_4297: PP_4297 - glyoxylate carboligase, at 4,886,942 to 4,888,717 _4297 PP_4298: PP_4298 - hydroxypyruvate isomerase, at 4,888,772 to 4,889,554 _4298 PP_4299: PP_4299 - tartronate semialdehyde reductase, at 4,889,707 to 4,890,600 _4299
Group Condition PP_4295 PP_4296 PP_4297 PP_4298 PP_4299
pH Growth at pH6 and (C) D-Glucose -0.4 -4.6 -0.2 -0.3 N.D.
pH Growth at pH7 and (C) D-Glucose -0.2 -4.6 -0.2 +0.1 N.D.
pH Growth at pH8 and (C) D-Glucose -0.1 -3.1 -0.1 -0.2 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.2 -3.0 +0.1 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -3.5 +0.1 -0.1 N.D.
carbon source Delta-Dodecalactone (C) +0.2 -2.9 -0.1 -0.5 N.D.
carbon source Valerolactone (C) -0.3 -2.3 -0.0 +0.1 N.D.
no stress control Growth with no stress -0.0 -1.5 -0.3 -0.6 N.D.
carbon source Phenylacetic (C) +0.0 -2.3 +0.0 -0.1 N.D.
carbon source Trisodium citrate (C) -0.2 -2.0 -0.2 +0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -0.8 -0.1 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.5 -0.1 -0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -2.2 +0.1 -0.2 N.D.
nitrogen source nitrogen source nitrate 20mM +0.4 -1.9 -0.3 -0.1 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.2 -1.6 -0.1 -0.4 N.D.
nitrogen source 2,6-diaminopimelic (N) +0.2 -2.1 -0.0 +0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 -1.8 +0.1 -0.4 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.2 -1.8 -0.1 +0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 -2.1 +0.2 -0.2 N.D.
temperature Growth at 25C +0.3 -1.6 -0.3 -0.0 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.1 -1.8 -0.3 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 -1.5 -0.1 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 -1.7 -0.0 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.9 +0.8 -0.3 -1.0 N.D.
nitrogen source Urea (N); with MOPS -0.9 -0.7 +0.3 +0.3 N.D.
nitrogen source NAG (N); with MOPS -0.8 +1.0 -0.3 -0.3 N.D.
carbon source 4-Aminobutyric 10 mM (C) -0.2 +1.8 -0.3 +0.1 N.D.
carbon source ferulate (C); with MOPS -0.0 +1.8 +0.3 -0.3 N.D.
carbon source carbon source D-Glucose 55.5 mM +0.3 +1.6 -0.4 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +2.0 -0.1 +0.2 N.D.
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