Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4284	PP_4285	PP_4286	PP_4287	PP_4288
nitrogen source	Adenine (N)	-0.0	-0.9	-1.4	-2.9	-0.4
nitrogen source	Adenine (N)	+0.1	-0.9	-1.4	-2.6	-0.4
nitrogen source	D-2-Aminobutyric (N)	-0.4	-1.7	-0.3	-1.3	-0.5
carbon source	ferulate (C); with MOPS	-0.1	-1.8	-1.1	-0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.7	-2.3	-0.5	+0.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.0	-1.5	-1.4	-0.4	+0.3
nitrogen source	nitrogen source nitrite 1mM	+0.2	-0.4	-1.2	-0.4	-0.9
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.1	-0.6	-0.9	-0.3	-0.5
temperature shift	Temperature shift 30_to_21; with MOPS	+0.1	-1.9	-0.2	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	-2.0	+0.5	-1.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.7	-1.3	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-1.0	-0.7	+0.0	-0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.1	-0.0	-1.7	-0.6	+0.0
temperature	Growth at 30C; with MOPS	-0.1	-0.9	+0.1	-0.5	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.6	-0.4	-0.6	+0.3	-0.8
nitrogen source	nitrate (N)	-0.1	-0.3	+0.3	-0.0	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.2	-0.2	-0.9	-0.4	-0.7
temperature shift	Temperature shift 30_to_25; with MOPS	+0.1	-1.8	+0.2	-0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5	-2.0	-1.0	+0.4	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	-1.0	-0.7	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-1.0	-0.5	-0.7	+0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.1	-2.1	+0.1	+0.3	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	-0.6	-1.1	-0.1	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.3	+0.5	+0.0	-0.1	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.1	-0.3	+0.7	-1.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.5	-0.9	-0.4	+0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.2	+0.9	-1.3	+0.1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3	-0.4	-1.3	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.5	-1.7	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.5	-1.6	-0.0	+2.4