Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4266 and PP_4267 are separated by 118 nucleotidesPP_4267 and PP_4268 are separated by 296 nucleotidesPP_4268 and PP_4269 are separated by 63 nucleotidesPP_4269 and PP_4270 are separated by 121 nucleotides PP_4266: PP_4266 - Adenine phosphoribosyltransferase, at 4,851,060 to 4,851,608 _4266 PP_4267: PP_4267 - Recombination protein RecR, at 4,851,727 to 4,852,329 _4267 PP_4268: PP_4268 - nucleoid-associated broad specificity regulator, at 4,852,626 to 4,852,961 _4268 PP_4269: PP_4269 - DNA polymerase III, gamma subunit, at 4,853,025 to 4,855,100 _4269 PP_4270: PP_4270 - conserved exported protein of unknown function, at 4,855,222 to 4,856,028 _4270
Group Condition PP_4266 PP_4267 PP_4268 PP_4269 PP_4270
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -3.3 -0.3 -3.2 N.D. -0.3
carbon source D-Glucose (C) -2.0 -0.0 -4.1 N.D. +0.1
nitrogen source Urea (N); with MOPS -1.5 -0.4 -4.1 N.D. +0.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) -5.5 -0.3 +0.5 N.D. -0.1
carbon source D-Glucose (C); with MOPS -0.8 -0.0 -4.2 N.D. +0.1
temperature Growth at 25C +0.0 +0.0 -4.3 N.D. -0.6
pH Growth at pH7 and (C) D-Glucose -0.2 -0.0 -4.3 N.D. -0.1
carbon source Delta-Nonalactone (C) -4.1 -0.2 -0.4 N.D. +0.2
pH Growth at pH9 and (C) D-Glucose +0.3 -0.2 -4.1 N.D. -0.4
stress Growth with Chloride 200 mM +0.8 -1.0 -4.2 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.6 +0.5 -3.4 N.D. +0.1
pH Growth at pH7 and (C) Trisodium citrate +0.4 -0.1 -4.1 N.D. -0.4
pH pH 5 -0.2 -1.3 -2.5 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.8 -3.2 N.D. +0.1
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.4 -0.2 -3.4 N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -0.1 -3.6 N.D. +0.3
carbon source DL-3-Hydroxybutyric (C) -0.1 -0.1 -3.3 N.D. +0.0
pH pH 4 -0.2 -0.7 -2.4 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.1 -3.5 N.D. +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -0.5 -2.3 N.D. +0.2
carbon source Nonanoic (C) -0.6 +0.3 -2.8 N.D. -0.1
phage P. putida Sci small MOI 0.1 +0.2 -0.3 -3.2 N.D. +0.4
carbon source carbon source D-Glucose 55.5 mM -0.6 +0.4 -2.3 N.D. -0.2
carbon source p-Coumaric (C) +0.3 -0.0 -3.0 N.D. +0.1
phage PUT8 MOI 0.1 +0.4 -0.2 -2.9 N.D. +0.0
stress Butanol 0.6 vol% -0.2 +0.3 -2.8 N.D. +0.2
pH Growth at pH8 and (C) D-Glucose +0.7 -0.3 -2.7 N.D. -0.2
temperature Growth at 25C; with MOPS +0.6 -0.9 -2.1 N.D. +0.2
carbon source Lignin Monomers (C) +0.5 -0.7 -1.8 N.D. +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 +1.0 +1.1 N.D. +0.5
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