Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4260	PP_4261	PP_4262	PP_4263	PP_4264
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	-3.8	-1.6	-3.4	-1.1
stress	Geraniol 1 vol%	-1.5	-2.4	-2.8	-2.2	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6	-1.6	-4.3	-2.4	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.6	-0.0	-2.9	-5.6	-0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.5	-2.1	-3.4	-2.3	-1.2
micoeukaryotes	C.elegans, mixed culture-1	-3.7	-2.0	-2.2	-0.6	-0.2
carbon source	ferulate (C); with MOPS	-1.2	-1.3	-3.5	-1.7	-0.3
nitrogen source	NAG (N); with MOPS	-0.1	-1.9	+0.1	-5.6	-0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5	-3.8	+0.9	-2.9	-1.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.5	-2.0	-1.6	-2.7	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6	-1.2	-2.0	-2.7	-0.9
lb	LB	-0.5	-1.7	-1.7	-2.2	-0.9
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.4	-1.0	-2.3	-1.9	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-1.4	-1.3	-1.7	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.6	-1.1	-3.6	-1.2	-0.5
carbon source	ferulate (C); with MOPS	-2.3	-1.1	-1.1	-2.0	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.9	-2.4	-2.0	-0.5	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	-1.4	-1.6	-2.4	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.6	+0.0	-4.2	-1.2	-0.1
lb	LB	-0.2	-1.8	-1.9	-1.3	-1.0
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8	-1.1	-2.4	-1.0	-0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-1.7	-1.3	-1.8	-1.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4	-1.4	-2.7	-1.1	-0.2
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB	-0.4	-1.1	-2.3	-1.3	-0.7
pH	Growth at pH6 and (C) D-Glucose	+0.0	-0.4	-4.0	-1.3	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.4	-0.5	-2.0	-0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.2	-0.1	-0.5	+1.2	-0.4
stress	R2A with Fusaric 480 ug/mL	+0.1	+0.5	-2.6	+0.8	-2.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+1.2	+1.5	+1.2	+1.2	+0.9
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+1.5	+2.2	+3.1	+1.2	+2.2