Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4234	PP_4235	PP_4236	PP_4237	PP_4238
nitrogen source	NAG (N); with MOPS	-0.0	+0.1	-0.3	+0.0	-7.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	-0.5	-0.4	-0.0	-2.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.3	-0.6	-0.6	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	-0.5	-1.0	-1.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.1	-0.3	-2.1	-0.0	-0.2
pH	Valerolactone (C) pH 6.5	-0.2	+0.1	-0.2	-0.2	-2.0
carbon source	Valerolactone (C)	-0.2	-0.6	-1.3	+0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.6	-0.8	-0.2	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.0	-0.6	-0.2	-1.4
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3	-0.1	+0.1	-0.3	-1.4
stress	3-methyl-3-butenol (commercial) 0.25 vol%	+0.2	-0.4	-1.7	+0.1	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.1	-0.0	+0.8	-0.3	-2.2
carbon source	4-Aminobutyric 10 mM (C)	-0.1	-0.2	+0.1	+0.1	-1.8
stress	3-methyl-3-butenol (pure) 0.25 vol%	+0.0	-0.7	-1.6	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.3	-0.4	+0.3	-1.0
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.0	-0.6	-1.2	+0.6	-0.2
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.1	-0.0	-0.0	+0.5	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.7	-1.0	+0.1	+0.3
nitrogen source	Propandiamine (N)	-0.1	-0.7	-1.0	+0.2	+0.4
pH	pH 9	+0.1	+0.2	+0.1	-0.0	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.5	-1.0	+0.1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	-0.1	-1.3	+0.0	+0.6
carbon source	Valerolactone (C)	-0.1	-0.3	-1.0	+0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.2	-1.2	+1.6	-0.6
phage	P. putida Sci Big MOI 0.1	-0.4	+0.2	+0.9	+0.7	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	-0.2	-1.6	+0.8	+1.4
nitrogen source	2,6-diaminopimelic (N)	-0.3	-1.0	+1.0	+0.2	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.0	+0.2	-1.0	+0.7	+1.0
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.2	+0.7	+0.9	+0.4	-0.5
phage	P. putida Missley MOI 0.1	+0.2	-0.3	+0.9	+0.3	+0.7