Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4229	PP_4230	PP_4231	PP_4232	PP_4233
nitrogen source	D-2-Aminobutyric (N)	-1.1	-0.6	+0.1	-0.2	-1.1
carbon source	Vanillin (C)	+0.1	+0.2	-2.5	-0.1	-0.1
carbon source	Vanillin (C)	+0.1	-0.1	-1.8	-0.2	-0.2
carbon source	Vanillin (C)	-0.1	-0.4	-1.9	+0.0	+0.2
carbon source	Vanillin (C)	-0.0	-0.1	-2.5	+0.2	+0.2
phage	P. putida Sci Big MOI 0.1	+0.3	-0.7	-0.7	-0.2	-0.6
nitrogen source	Ammonium chloride (N)	+0.1	-0.5	-0.4	-0.1	-0.7
pH	Valerolactone (C) pH 6.5	+0.1	-0.2	-0.5	-0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.6	-0.2	-0.4	+0.2
carbon source	Valerolactone (C)	-0.2	-0.8	-0.8	+0.0	+0.4
phage	P. putida Sci small MOI 0.1	+0.4	-1.2	-0.2	-0.3	+0.2
nitrogen source	2,6-diaminopimelic (N)	-0.3	-0.4	+0.5	-0.3	-0.6
stress	R2A with Fusaric 240 ug/mL	-0.3	+0.4	-0.2	-0.2	-0.6
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.3	-0.2	+0.7	-0.1	-0.9
carbon source	L-Leucine (C)	+0.3	-0.4	+0.2	+0.4	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	+0.3	-0.8	-0.2	+0.3
nitrogen source	D-2-Aminobutyric (N)	-0.4	-0.1	+1.0	-0.0	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3	+0.3	-0.9	+0.0	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4	+0.6	-0.6	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2	+1.0	-0.2	+0.1	-0.4
phage	P. putida Sci small MOI 0.1	+0.4	+0.3	-0.4	-0.2	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.5	+0.5	-0.5	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.4	+0.1	+0.2	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.0	+0.9	-0.3	+0.3	+0.3
nitrogen source	Urea (N)	+0.4	+0.5	-0.3	+0.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	+0.5	-0.6	+0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.4	+0.4	+0.1	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.3	+0.0	+0.9
nitrogen source	NAG (N); with MOPS	+0.0	+0.4	+0.6	+0.2	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	+0.8	+0.4	+0.3	+0.4