Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4192 and PP_4193 overlap by 7 nucleotidesPP_4193 and PP_4194 are separated by 352 nucleotidesPP_4194 and PP_4195 are separated by 752 nucleotidesPP_4195 and PP_4196 are separated by 129 nucleotides PP_4192: PP_4192 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 4,738,373 to 4,738,741 _4192 PP_4193: PP_4193 - succinate dehydrogenase membrane b-556 subunit, at 4,738,735 to 4,739,121 _4193 PP_4194: PP_4194 - citrate synthase, at 4,739,474 to 4,740,763 _4194 PP_4195: PP_4195 - putative oxidoreductase, at 4,741,516 to 4,741,770 _4195 PP_4196: PP_4196 - conserved exported protein of unknown function, at 4,741,900 to 4,742,334 _4196
Group Condition PP_4192 PP_4193 PP_4194 PP_4195 PP_4196
carbon source 4-Aminobutyric 10 mM (C) N.D. N.D. N.D. N.D. -3.4
pH Growth at pH8 and (C) Trisodium citrate N.D. N.D. N.D. N.D. -2.8
temperature shift Temperature shift 30_to_25; with MOPS N.D. N.D. N.D. N.D. -2.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. N.D. N.D. -1.9
pH Growth at pH9 and (C) Trisodium citrate N.D. N.D. N.D. N.D. -1.9
carbon source D-Glucose (C) with 20AA_mix_minus_Cys N.D. N.D. N.D. N.D. -1.9
nitrogen source nitrogen source nitrite 1mM N.D. N.D. N.D. N.D. -1.9
nitrogen source Propiolactam (N) N.D. N.D. N.D. N.D. -1.8
carbon source D-Glucose (C) N.D. N.D. N.D. N.D. -1.8
nitrogen source D-2-Aminobutyric (N) N.D. N.D. N.D. N.D. -1.8
phage P. put South MOI 10 N.D. N.D. N.D. N.D. -1.7
phage moi 100 Time6-phageFRS N.D. N.D. N.D. N.D. -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. N.D. N.D. -1.6
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM N.D. N.D. N.D. N.D. -1.4
nitrogen source nitrate (N) N.D. N.D. N.D. N.D. -1.4
pH Growth at pH6 and (C) D-Glucose N.D. N.D. N.D. N.D. -1.4
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL N.D. N.D. N.D. N.D. -1.4
pH pH 5 N.D. N.D. N.D. N.D. -1.4
no stress control Growth with no stress N.D. N.D. N.D. N.D. -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. N.D. N.D. -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. N.D. N.D. +1.3
carbon source 4-Methyl-2-oxopentanoic (C) N.D. N.D. N.D. N.D. +1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. N.D. N.D. +1.3
carbon source 3-methyl-1-butanol 0.25 vol% (C) N.D. N.D. N.D. N.D. +1.5
carbon source ferulate (C); with MOPS N.D. N.D. N.D. N.D. +1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. N.D. N.D. N.D. +1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. N.D. N.D. +1.7
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