Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4181 and PP_5661 are separated by 154 nucleotidesPP_5661 and PP_4183 are separated by 67 nucleotidesPP_4183 and PP_4184 are separated by 235 nucleotidesPP_4184 and PP_4185 are separated by 403 nucleotides PP_4181: PP_4181 - conserved protein of unknown function, at 4,724,112 to 4,724,588 _4181 PP_5661: PP_5661 - putative lipoprotein, at 4,724,743 to 4,725,015 _5661 PP_4183: PP_4183 - conserved membrane protein of unknown function, at 4,725,083 to 4,725,832 _4183 PP_4184: PP_4184 - branched chain amino acid transporter, at 4,726,068 to 4,727,381 _4184 PP_4185: PP_4185 - succinyl-CoA synthetase alpha subunit, at 4,727,785 to 4,728,669 _4185
Group Condition PP_4181 PP_5661 PP_4183 PP_4184 PP_4185
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -2.7 -0.1 -0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.8 -2.0 +0.5 -0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.3 -1.6 -0.4 -0.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -1.9 -0.5 -0.1 N.D.
nitrogen source D-2-Aminobutyric (N) +0.3 -0.8 -1.0 -1.2 N.D.
nitrogen source D-2-Aminobutyric (N) -0.7 -1.0 +0.3 -1.2 N.D.
pH Valerolactone (C) pH 6.5 -0.1 -3.1 +0.2 +0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.3 -1.0 -0.1 +0.1 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.2 -1.9 -0.5 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.8 -0.0 -0.1 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.1 -0.2 -0.3 N.D.
no stress control Growth with no stress +0.0 -1.5 -0.3 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -0.7 -0.1 -0.6 N.D.
carbon source Valeric (C) -1.1 -0.7 -0.2 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.4 +0.1 -0.4 N.D.
nitrogen source nitrite (N) +0.1 -1.3 -0.3 +0.2 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.6 -0.9 +0.1 +0.3 N.D.
carbon source ferulate (C); with MOPS -0.3 -1.2 +0.1 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -1.3 +0.2 -0.2 N.D.
carbon source benzoic (C) -0.4 -1.1 +0.2 +0.3 N.D.
carbon source ferulate (C); with MOPS +0.3 -1.1 -0.3 +0.3 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.1 -0.9 -0.3 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.8 +0.6 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +1.2 -0.2 -0.5 N.D.
nitrogen source Propandiamine (N) +0.2 -0.6 -0.5 +1.2 N.D.
carbon source Lignin Monomers (C) +0.5 +0.4 +0.9 -0.5 N.D.
phage P. put South MOI 1 +0.2 -0.3 +0.5 +0.8 N.D.
phage P. putida Sci small MOI 0.1 +0.5 +0.4 +0.9 -0.2 N.D.
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.2 +0.4 +3.4 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.0 +0.4 +0.3 +3.5 N.D.
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