Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4176	PP_4177	PP_4178	PP_4179	PP_4180
pH	Growth at pH6 and (C) D-Glucose	+0.1	+0.1	-2.2	+0.2	-2.6
carbon source	L-Leucine (C)	-0.1	+0.2	-0.3	-1.9	+0.2
carbon source	L-Leucine (C)	-0.1	-0.1	-0.2	-1.7	+0.4
nitrogen source	Ammonium chloride (N)	-0.1	-0.2	-0.5	+0.4	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+0.3	+0.0	+0.1	-1.7
nitrogen source	2,6-diaminopimelic (N)	+0.0	+0.3	-1.1	-0.3	-0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.3	+0.1	+0.4	-0.8	-0.7
nitrogen source	Urea (N)	+0.2	-0.6	-0.7	+0.2	-0.3
nitrogen source	Urea (N)	-0.2	+0.1	-1.1	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	-0.9	-0.6	+0.5
nitrogen source	NAG (N); with MOPS	+0.3	-0.0	+0.2	+0.4	-1.8
carbon source	4-Methyl-2-oxopentanoic (C)	+0.3	+0.2	+0.2	-1.3	-0.2
carbon source	1,3-Butandiol (C)	-0.0	+0.3	+0.4	-1.1	-0.2
pH	Growth at pH7 and (C) D-Glucose	-0.4	-0.1	-0.3	-0.5	+0.7
no stress control	Growth with no stress	+0.1	+0.2	-1.1	-0.0	+0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.1	+0.1	-0.5	+0.6	-0.7
carbon source	L-Leucine (C)	+0.3	+0.3	+0.2	-1.3	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-0.1	+0.6	+0.2	-0.9
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.2	+0.5	-1.1	+0.3	+0.1
nitrogen source	D-2-Aminobutyric (N)	-0.1	+0.1	+0.1	+1.2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.3	+0.8	+0.4	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.2	+0.5	-0.6	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.6	+0.4	+0.0	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5	-0.1	+0.5	-0.4	+0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.6	+0.1	-0.3	+0.7	+0.2
carbon source	Delta-Decalactone (C)	+0.2	-0.3	+0.5	+0.7	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.4	+0.4	+1.3	+0.4
carbon source	DL-2-Aminoadipic 10 mM (C)	+0.1	+0.2	+0.3	+1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.3	-0.2	-0.2	+2.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.3	+0.1	+0.2	+0.6	+1.0