Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4164	PP_4165	PP_4166	PP_4167	PP_4168
carbon source	Delta-Nonalactone (C)	-4.5	-1.1	+0.5	+0.2	+0.3
phage	P. putida Sci small MOI 0.1	-0.9	-0.9	-1.4	-0.2	+0.1
carbon source	Delta-Decalactone (C)	-1.8	-0.9	+0.0	-0.1	-0.6
nitrogen source	Urea (N); with MOPS	-0.4	-0.5	-0.9	-0.2	-1.1
phage	P. putida Sci Big MOI 0.1	-1.4	-0.4	-0.2	-0.1	-0.3
carbon source	Delta-Decalactone (C)	-1.9	-0.5	+0.4	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.0	-1.0	-0.4	-0.4
carbon source	1,3-Butandiol (C)	-1.0	-0.1	-0.3	+0.2	-0.4
carbon source	ferulate (C); with MOPS	+0.2	-0.2	-0.7	+0.1	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	+0.3	+0.1	-0.7	-0.2	-0.7
nitrogen source	nitrogen source nitrite 1mM	+0.1	-0.2	-0.9	+0.4	-0.5
phage	P. putida Sci small MOI 0.1	+0.2	+0.4	+0.3	-1.2	-0.5
phage	P. putida PUT 7 MOI 1	-0.4	+0.0	+0.6	-0.1	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	-0.3	+0.6	-0.2	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	+0.1	+0.0	+0.7	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.2	-0.6	-0.5	+1.2
temperature shift	Temperature shift 10_to_30; with MOPS	+0.4	+0.2	-0.6	+0.3	-0.7
stress	Growth with Chloride 200 mM	+0.3	+0.4	-0.4	+0.2	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	+0.3	-1.3	+0.1	+0.5
phage	PUT 8 MOI 1	+0.3	+0.2	-0.6	+0.7	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.0	+0.4	+0.5	-0.9	+0.3
nitrogen source	nitrogen source nitrite 0.5mM	+0.3	-0.6	+0.6	+0.6	-0.3
pH	pH 9	-0.2	+0.3	+0.5	-0.5	+0.6
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.5	-0.0	+0.3	+1.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.8	-0.0	-0.7	+0.7	+0.0
temperature shift	Temperature shift 30_to_21; with MOPS	+0.3	+0.3	+0.6	+0.5	-0.6
carbon source	L-Leucine (C)	+0.9	-0.5	+0.2	+0.4	+0.0
pH	Valerolactone (C) pH 6.5	-0.5	+0.0	+0.2	+0.7	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.0	+0.7	-0.9	+0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.4	+0.2	-0.2	+0.5