Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4158	PP_4159	PP_4160	PP_4161	PP_5660
phage	P. putida Missley MOI 0.1	+0.2	-2.9	-0.5	-0.2	N.D.
nitrogen source	NAG (N); with MOPS	+0.0	-2.7	-0.3	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	-0.7	-0.1	-0.3	N.D.
phage	P. putida Sci small MOI 0.1	+0.1	-1.7	-0.3	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-0.7	+0.1	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.0	-0.2	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.1	-0.0	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-0.2	-0.1	-0.4	N.D.
phage	P. put PUT 10 MOI 10	+0.0	-1.1	-0.3	-0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-1.1	+0.0	+0.0	N.D.
phage	P. put PUT 10 MOI 10	+0.3	-1.6	-0.5	+0.1	N.D.
phage	P. put PUT 10 MOI 0.1	+0.1	-1.4	-0.2	-0.2	N.D.
carbon source	ferulate (C); with MOPS	-0.4	-1.3	+0.2	-0.1	N.D.
pH	Growth at pH9 and (C) Trisodium citrate	+0.2	-1.5	+0.2	-0.4	N.D.
pH	Growth at pH7 and (C) D-Glucose	+0.3	-1.4	-0.3	-0.0	N.D.
carbon source	Lignin Monomers (C)	+0.1	-1.6	+0.1	+0.1	N.D.
carbon source	Valerolactone (C)	-0.4	-0.7	-0.4	+0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-1.2	+0.2	+0.4	N.D.
phage	P. put South MOI 10	-0.1	-1.2	+0.4	-0.2	N.D.
carbon source	ferulate (C); with MOPS	+0.2	-1.5	+0.5	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.7	+0.5	-0.0	N.D.
temperature	Growth at 25C	+0.3	-1.4	+0.1	+0.2	N.D.
pH	pH 9	+0.2	-1.3	+0.4	+0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-1.3	+0.2	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.7	-0.2	-0.2	N.D.
temperature shift	Temperature shift 30_to_34; with MOPS	-0.1	-1.1	+0.4	+0.2	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7	+0.7	+0.1	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+1.0	+0.3	+0.1	N.D.
pH	Valerolactone (C) pH 6.5	+0.1	+1.4	-0.1	+0.3	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+1.6	+0.2	+0.1	N.D.