Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4151	PP_4152	PP_4154	PP_4155	PP_4156
carbon source	D-Glucose (C)	-0.3	-0.3	+0.2	+0.2	-2.8
no stress control	Growth with no stress	-0.0	-0.7	-0.1	-0.1	-2.0
pH	Growth at pH6 and (C) Trisodium citrate	-1.0	-0.1	-0.1	+0.2	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.0	-0.3	-0.1	-1.8
temperature	Growth at 30C; with MOPS	-0.3	-0.5	-0.0	-0.4	-1.2
temperature	Growth at 25C	-0.3	-0.6	+0.0	+0.1	-1.5
carbon source	D-Glucose (C); with MOPS	-0.2	-0.3	-0.1	+0.0	-1.5
nitrogen source	NAG (N); with MOPS	-0.2	+0.1	-0.0	-0.6	-1.3
temperature shift	Temperature shift 30_to_10	-0.4	-0.2	-0.3	+0.0	-1.0
nitrogen source	Urea (N)	-1.5	+0.1	-0.2	+0.3	-0.3
carbon source	Glycerol (C)	+0.1	-0.0	+0.0	-0.2	-1.5
r2a control	R2A control	-0.6	+0.2	+0.1	+0.0	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.4	+0.2	-0.2	+0.3	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	+0.0	-0.0	+0.5	-1.0
pH	Growth at pH9 and (C) D-Glucose	-0.5	+0.2	+0.0	+0.3	-0.9
no stress control	Growth with no stress	+0.4	+0.0	+0.1	+0.2	-1.4
carbon source	L-Leucine (C)	+0.5	+0.2	+0.0	+0.3	-1.7
phage	P. putida Sci Big MOI 0.1	-0.6	-0.2	-0.4	+0.2	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.0	+0.1	+0.0	+0.5	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.7	+0.1	-0.0	+0.3	-0.7
phage	PUT 8 MOI 1	+0.7	+0.5	+0.2	+0.3	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	+0.1	-1.0	+1.0
nitrogen source	D-2-Aminobutyric (N)	-0.2	+0.2	-0.4	-0.0	+1.1
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	+0.4	-0.3	-0.2	+0.4	+0.6
carbon source	Valeric (C)	+0.7	-0.0	-0.3	+0.3	+0.6
phage	P. putida Sci small MOI 0.1	+0.7	-0.4	+0.2	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.5	-0.1	-0.1	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.2	+0.5	-0.1	+0.6	+0.8
pH	pH 4	-0.1	+0.3	-0.1	+0.2	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.4	+0.2	-0.0	+1.3