Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4143 and PP_4144 are separated by 58 nucleotidesPP_4144 and PP_4145 are separated by 100 nucleotidesPP_4145 and PP_4146 are separated by 220 nucleotidesPP_4146 and PP_4147 overlap by 4 nucleotides PP_4143: PP_4143 - conserved protein of unknown function, at 4,679,972 to 4,680,772 _4143 PP_4144: PP_4144 - Hydroxyacylglutathione hydrolase, at 4,680,831 to 4,681,610 _4144 PP_4145: PP_4145 - Membrane-bound lytic murein transglycosylase D, at 4,681,711 to 4,683,141 _4145 PP_4146: PP_4146 - Peptide ABC transporter, periplamic peptide-binding protein, at 4,683,362 to 4,685,191 _4146 PP_4147: PP_4147 - microcin C transporter - periplasmic binding protein, at 4,685,188 to 4,687,023 _4147
Group Condition PP_4143 PP_4144 PP_4145 PP_4146 PP_4147
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -6.9 -0.4 -0.2 -0.1 -0.2
micoeukaryotes Tetrahymena sp., Mixed culture-1 -7.0 +0.3 +0.1 +0.0 -0.0
micoeukaryotes Tetrahymena sp., Mixed culture-2 -6.7 -0.3 +0.3 +0.0 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.1 -0.1 -0.3 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.6 +0.1 -0.1 -0.0 +0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -4.9 -0.6 -0.1 +0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.9 -0.1 -0.0 +0.1 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 -0.1 -0.2 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.8 -0.7 -0.1 -0.3 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.6 +0.3 -0.1 -0.3 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.4 -0.2 -0.1 -0.2 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.6 -0.4 -0.3 -0.0 -0.5
micoeukaryotes C.elegans, mixed culture-1 -4.1 +0.1 +0.0 -0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.4 -0.2 +0.0 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.5 +0.1 +0.1 +0.0 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.0 +0.1 -0.4 +0.3 -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.6 +0.2 -0.1 +0.0 +0.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 -3.6 +0.1 +0.0 -0.4 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.3 +0.6 -0.1 -0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -3.6 -0.2 -0.3 -0.1 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 -3.8 +0.2 -0.0 -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.6 -0.4 -0.2 +0.2 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 -3.8 +0.1 -0.1 +0.0 -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.3 +0.2 -0.3 -0.1 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.8 +0.1 -0.0 -0.2 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.0 -0.3 +0.4 -0.1 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.1 -0.1 -0.0 +0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.6 +0.3 -0.2 +0.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.5 +0.4 -0.2 +0.1 -0.3
carbon source Delta-Nonalactone (C) -1.4 +0.2 +0.3 +0.3 +2.5
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