Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4131 and PP_4132 are separated by 90 nucleotidesPP_4132 and PP_4133 are separated by 179 nucleotidesPP_4133 and PP_4134 overlap by 4 nucleotidesPP_4134 and PP_4135 overlap by 8 nucleotides PP_4131: PP_4131 - NADH-quinone oxidoreductase subunit N, at 4,669,669 to 4,671,138 _4131 PP_4132: PP_4132 - conserved protein of unknown function, at 4,671,229 to 4,671,492 _4132 PP_4133: PP_4133 - Transcriptional regulator-related protein, at 4,671,672 to 4,672,049 _4133 PP_4134: PP_4134 - conserved membrane protein of unknown function, at 4,672,046 to 4,672,408 _4134 PP_4135: PP_4135 - conserved protein of unknown function, at 4,672,401 to 4,672,748 _4135
Group Condition PP_4131 PP_4132 PP_4133 PP_4134 PP_4135
pH Growth at pH6 and (C) D-Glucose -2.5 -1.0 -0.8 N.D. -0.8
carbon source Delta-Decalactone (C) -3.2 -0.1 -1.0 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.7 +0.5 -1.5 N.D. -0.7
temperature Growth at 25C; with MOPS -1.7 -0.4 -1.4 N.D. -0.7
pH Growth at pH6 and (C) D-Glucose -2.0 -0.2 -1.9 N.D. -0.3
carbon source Levulinic Acid (C) -3.8 -0.1 -0.3 N.D. -0.1
carbon source 3-methyl-1-butanol (C) -3.8 -0.0 -0.0 N.D. -0.0
carbon source Levulinic Acid (C) -3.9 +0.1 -0.1 N.D. +0.4
carbon source Vanillin (C) -3.2 +0.1 -0.5 N.D. +0.1
carbon source Delta-Undecalactone (C) -3.8 -0.0 +0.4 N.D. -0.0
carbon source Delta-Undecalactone (C) -4.2 +0.1 +0.9 N.D. -0.2
nitrogen source nitrate (N) -2.0 +0.4 -0.9 N.D. -0.7
carbon source 1,4-Butanediol (C) -3.4 -0.2 +0.1 N.D. +0.2
carbon source Delta-Decalactone (C) -3.8 -0.1 +0.3 N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.7 +0.1 -0.9 N.D. +0.2
carbon source ferulate (C); with MOPS -2.6 +0.3 -0.8 N.D. +0.2
carbon source Delta-Dodecalactone (C) -3.4 +0.1 +0.3 N.D. +0.2
pH Growth at pH9 and (C) Trisodium citrate -2.2 -0.5 +0.6 N.D. -0.7
carbon source Vanillin (C) -3.4 +0.3 +0.6 N.D. -0.1
pH Growth at pH7 and (C) D-Glucose -3.5 +0.3 +1.3 N.D. -0.7
carbon source 2-methyl-1-butanol (C) -3.1 -0.3 +0.9 N.D. +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.4 -0.0 +1.1 N.D. +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.2 +0.1 +1.1 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -2.6 +0.2 +2.2 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -0.3 +1.9 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.7 +0.0 +1.1 N.D. +1.2
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +2.7 +0.4 -1.0 N.D. -0.2
micoeukaryotes C.elegans, mixed culture-2 +3.4 -0.4 -1.1 N.D. +0.3
nitrogen source DL-2-Aminobutyric (N) +3.9 +0.2 +0.4 N.D. -0.1
nitrogen source DL-2-Aminobutyric (N) +4.0 +0.3 +0.7 N.D. +0.3
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