Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_4129	PP_4130	PP_4131	PP_4132	PP_4133
carbon source	Levulinic Acid (C)	-4.4	-2.9	-3.9	+0.1	-0.1
carbon source	3-methyl-1-butanol (C)	-4.1	-2.5	-3.8	-0.0	-0.0
carbon source	Levulinic Acid (C)	-2.7	-3.2	-3.8	-0.1	-0.3
carbon source	Delta-Undecalactone (C)	-3.5	-3.1	-4.2	+0.1	+0.9
carbon source	Delta-Undecalactone (C)	-3.4	-3.0	-3.8	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-3.0	-2.7	-2.7	+0.5	-1.5
carbon source	Vanillin (C)	-3.3	-2.4	-3.2	+0.1	-0.5
carbon source	3-methyl-1-butanol (C)	-3.0	-2.7	-3.5	+0.1	-0.0
carbon source	4-Methyl-2-oxopentanoic (C)	-3.6	-2.2	-3.2	-0.1	+0.2
carbon source	Delta-Decalactone (C)	-3.2	-2.1	-3.8	-0.1	+0.3
pH	Growth at pH6 and (C) D-Glucose	-2.5	-1.8	-2.5	-1.0	-0.8
carbon source	4-Methyl-2-oxopentanoic (C)	-3.6	-1.8	-2.3	-0.1	-0.7
carbon source	Delta-Decalactone (C)	-2.6	-1.7	-3.2	-0.1	-1.0
carbon source	Delta-Dodecalactone (C)	-2.8	-2.5	-2.9	-0.1	+0.0
carbon source	3-Hydroxypropionate (C)	-2.7	-3.0	-2.7	+0.1	+0.0
carbon source	2-methyl-1-butanol (C)	-2.6	-2.9	-2.2	-0.3	-0.3
carbon source	4-Methyl-2-oxopentanoic (C)	-2.7	-2.3	-3.0	-0.0	-0.1
carbon source	1,4-Butanediol (C)	-3.1	-1.5	-3.4	-0.2	+0.1
carbon source	Vanillin (C)	-2.8	-2.7	-3.4	+0.3	+0.6
carbon source	Delta-Dodecalactone (C)	-3.2	-1.8	-3.4	+0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-3.1	-1.6	-1.5	+0.3	-1.6
pH	Growth at pH9 and (C) Trisodium citrate	-3.4	-1.7	-2.7	+0.5	+0.2
pH	Growth at pH9 and (C) Trisodium citrate	-2.3	-2.6	-2.2	-0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-2.3	-2.6	-2.6	+0.2	+2.2
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+2.6	+1.8	+2.7	+0.4	-1.0
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+3.4	+2.2	+3.0	-0.1	-0.2
micoeukaryotes	C.elegans, mixed culture-2	+3.5	+3.3	+3.4	-0.4	-1.1
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+2.7	+2.5	+2.7	+0.5	+0.3
nitrogen source	DL-2-Aminobutyric (N)	+3.9	+3.8	+3.9	+0.2	+0.4
nitrogen source	DL-2-Aminobutyric (N)	+4.2	+3.8	+4.0	+0.3	+0.7