Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_4118 and PP_4119 are separated by 383 nucleotidesPP_4119 and PP_4120 are separated by 9 nucleotidesPP_4120 and PP_4121 are separated by 79 nucleotidesPP_4121 and PP_4122 are separated by 2 nucleotides PP_4118: PP_4118 - putative Membrane protein, at 4,655,106 to 4,655,801 _4118 PP_4119: PP_4119 - NADH-quinone oxidoreductase subunit A, at 4,656,185 to 4,656,598 _4119 PP_4120: PP_4120 - NADH-quinone oxidoreductase subunit B, at 4,656,608 to 4,657,285 _4120 PP_4121: PP_4121 - NADH-quinone oxidoreductase subunit C/D, at 4,657,365 to 4,659,146 _4121 PP_4122: PP_4122 - proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E, at 4,659,149 to 4,659,646 _4122
Group Condition PP_4118 PP_4119 PP_4120 PP_4121 PP_4122
carbon source Levulinic Acid (C) -0.1 N.D. -4.1 -4.3 -5.4
carbon source Delta-Undecalactone (C) -0.2 N.D. -3.9 -2.6 -4.8
carbon source Delta-Decalactone (C) -0.3 N.D. -3.8 -2.8 -4.4
carbon source Levulinic Acid (C) -0.0 N.D. -4.0 -4.0 -3.2
carbon source Delta-Undecalactone (C) -0.2 N.D. -3.3 -2.7 -4.7
carbon source 3-methyl-1-butanol (C) -0.4 N.D. -3.9 -2.7 -3.8
carbon source 4-Methyl-2-oxopentanoic (C) +0.1 N.D. -3.7 -2.3 -4.8
carbon source Delta-Dodecalactone (C) -0.1 N.D. -3.6 -2.6 -4.2
carbon source 3-methyl-1-butanol (C) -0.1 N.D. -3.0 -3.1 -4.3
carbon source Delta-Decalactone (C) -0.2 N.D. -3.2 -2.3 -4.3
carbon source Delta-Dodecalactone (C) -0.1 N.D. -3.3 -2.2 -4.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 N.D. -3.6 -1.7 -3.9
carbon source 2-methyl-1-butanol (C) -0.3 N.D. -3.1 -2.1 -3.1
carbon source 3-Hydroxypropionate (C) +0.0 N.D. -3.2 -1.9 -3.4
carbon source Beta-alanine (C) +0.1 N.D. -3.7 -1.8 -3.0
carbon source Acetate Carbon Source (20mM) -0.1 N.D. -2.4 -2.5 -3.4
carbon source Vanillin (C) +0.2 N.D. -1.6 -2.1 -4.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 N.D. -3.0 -2.7 -2.4
carbon source Vanillin (C) +0.2 N.D. -3.0 -3.1 -2.2
carbon source 1,4-Butanediol (C) +0.1 N.D. -3.6 -2.2 -2.3
carbon source Phenylacetic (C) +0.2 N.D. -2.2 -2.3 -3.7
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 N.D. -3.4 -2.5 -2.0
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.2 N.D. -2.5 -0.8 -4.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 N.D. -2.3 -2.1 -3.5
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.1 N.D. +3.3 +2.9 +1.6
micoeukaryotes C.elegans, mixed culture-1 +0.4 N.D. +2.7 +2.7 +3.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.8 N.D. +3.0 +2.7 +3.7
nitrogen source DL-2-Aminobutyric (N) -0.0 N.D. +3.7 +3.5 +3.9
nitrogen source DL-2-Aminobutyric (N) +0.1 N.D. +3.9 +3.9 +4.1
micoeukaryotes C.elegans, mixed culture-2 +0.7 N.D. +4.0 +3.8 +4.2
remove
PP_4118
plot		 remove
PP_4119
plot		 remove
PP_4120		 remove
PP_4121
plot		 remove
PP_4122
plot