Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4111	PP_4112	PP_4113	PP_4114	PP_4115
pH	pH 6	-0.1	-0.4	-0.4	-0.3	-0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.5	-0.4	-0.4	-0.1	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	+0.2	-0.2	-0.2	-0.3
carbon source	D-Glucose (C); with MOPS	-0.2	-0.7	-0.2	+0.1	-0.2
phage	P. putida South MOI 10	+0.1	-0.5	-0.3	-0.4	+0.2
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.4	-0.3	-0.3	-0.2	+0.3
carbon source	carbon source D-Glucose 55.5 mM	-0.7	+0.0	-0.2	-0.2	+0.4
pH	pH 7	-0.5	-0.3	-0.2	-0.2	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.0	-0.7	+0.3	+0.1	-0.3
pH	Growth at pH9 and (C) Trisodium citrate	-0.1	+0.4	-0.3	-0.0	-0.5
nitrogen source	nitrite (N)	+0.1	+0.2	+0.2	-0.1	-0.9
nitrogen source	NAG (N); with MOPS	-0.6	+0.3	-0.3	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	-0.6	-0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.1	+0.1	-0.3	-0.6
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3	+0.6	-0.2	+0.1	-0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.4	-0.1	+0.1	-0.4	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.3	+0.2	-0.1	+0.4
pH	Growth at pH6 and (C) D-Glucose	-0.5	+0.4	-0.2	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.6	-0.4	+0.1	+0.6
carbon source	ferulate (C); with MOPS	+0.4	-0.2	-0.1	+0.4	-0.4
carbon source	acetate (C)	-0.6	+0.3	+0.2	+0.0	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	-0.2	+0.2	-0.2	+0.7
stress	Growth with Chloride 500 mM	-0.5	-0.0	+0.3	+0.2	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3	+0.4	-0.2	-0.0	+0.5
nitrogen source	NAG (N); with MOPS	-0.2	+0.5	-0.2	+0.1	+0.3
pH	Growth at pH6 and (C) D-Glucose	-0.4	+0.6	-0.3	+0.3	+0.3
stress	Growth with Chloride 500 mM; with MOPS	-0.1	+0.3	-0.2	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.7	+0.0	+0.4	-0.1
phage	P. putida PUT 7 MOI 1	+0.4	-0.1	+0.4	+0.2	+1.0
phage	P. putida Missley MOI 0.1	+0.5	+0.4	-0.0	+0.6	+0.5