Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4107 and PP_4108 are separated by 179 nucleotidesPP_4108 and PP_4109 are separated by 3 nucleotidesPP_4109 and PP_5658 are separated by 189 nucleotidesPP_5658 and PP_4111 are separated by 73 nucleotides PP_4107: PP_4107 - Transcriptional regulator, LysR family, at 4,642,058 to 4,642,954 _4107 PP_4108: PP_4108 - 2-aminoadipate transaminase (EC 2.6.1.39) (from data), at 4,643,134 to 4,644,384 _4108 PP_4109: PP_4109 - conserved protein of unknown function, at 4,644,388 to 4,644,690 _4109 PP_5658: PP_5658 - protein of unknown function, at 4,644,880 to 4,645,362 _5658 PP_4111: PP_4111 - Elongation factor G 2, at 4,645,436 to 4,647,547 _4111
Group Condition PP_4107 PP_4108 PP_4109 PP_5658 PP_4111
carbon source D-Lysine 10 mM (C) -0.2 -4.6 -0.2 -1.2 -0.1
carbon source D-Lysine 10 mM (C) -0.2 -5.9 +0.1 +0.1 -0.2
carbon source ferulate (C); with MOPS +0.3 +0.0 -5.0 -0.8 +0.4
carbon source carbon source 4-vinylphenol 0.01 mM -0.3 -0.1 -4.3 -0.2 -0.2
nitrogen source NAG (N); with MOPS -0.6 +0.4 -2.0 -1.9 -0.2
nitrogen source L-Pipecolic Acid (N) -0.1 -2.7 -0.6 +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.4 -3.1 -0.7 +0.5
nitrogen source Propandiamine (N) -2.0 -0.6 +0.2 -0.6 +0.0
carbon source carbon source D-Glucose 55.5 mM -0.1 -0.3 -1.1 -0.9 -0.7
nitrogen source 2,6-diaminopimelic (N) -0.2 -0.2 -2.2 -0.4 +0.0
carbon source L-Lysine (C) -0.1 -1.9 -0.5 -0.5 +0.2
nitrogen source Propandiamine (N) -1.8 -0.2 -0.6 -0.1 +0.1
nitrogen source L-Pipecolic Acid (N) -0.2 -2.2 -0.2 +0.2 -0.2
stress Growth with Chloride 500 mM +0.0 +0.1 -0.9 -1.3 -0.5
carbon source carbon source Bisabolene 48.9 mM +0.2 +0.0 -1.6 -0.8 -0.3
phage P. putida Sci Big MOI 0.1 +0.6 -0.8 -0.8 -1.1 -0.1
carbon source carbon source 3-O-methyl-glucose 10 mM -0.4 +0.9 -1.7 -0.7 -0.3
phage P. putida Sci small MOI 0.1 -0.1 +0.8 -2.0 -0.2 -0.4
pH pH 5 -0.2 +0.6 -1.0 -0.7 -0.4
pH Growth at pH6 and (C) Trisodium citrate -0.1 -0.7 -1.5 +0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.0 -1.2 -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.3 -1.6 -0.6 -0.2
temperature shift Temperature shift 10_to_25; with MOPS +0.4 +0.4 +0.1 -1.9 -0.2
nitrogen source NAG (N); with MOPS -0.1 -0.4 -1.0 +0.9 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.0 +0.5 -1.9 +0.3 +0.3
pH Growth at pH7 and (C) D-Glucose -0.1 -0.4 +1.1 -1.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +0.5 -1.5 +0.5 -0.2
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.3 -0.2 -1.5 +1.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +0.4 +1.4 -0.4 -0.5
carbon source D-Glucose (C) -0.2 +0.3 +1.0 +1.0 -0.4
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