Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4102	PP_4103	PP_4104	PP_4105	PP_4106
phage	PUT8 MOI 0.1	-0.6	-0.2	-1.1	-0.5	-0.4
nitrogen source	D-2-Aminobutyric (N)	-1.5	-0.4	-0.5	-0.0	-0.3
nitrogen source	NAG (N); with MOPS	-1.2	+0.1	-1.0	-0.0	-0.1
nitrogen source	Propiolactam (N)	-1.1	-0.1	-0.4	-0.2	-0.2
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.8	-0.2	-0.6	-0.2	-0.1
carbon source	Delta-Decalactone (C)	-0.9	-0.3	-0.2	-0.3	-0.1
pH	Valerolactone (C) pH 6.5	-1.7	-0.2	-0.3	-0.1	+0.5
carbon source	Valerolactone (C)	-0.9	-0.1	-0.7	+0.3	-0.2
nitrogen source	L-Pipecolic Acid (N)	-0.1	+0.1	-0.5	+0.2	-1.3
carbon source	acetate (C)	-1.1	+0.0	-0.6	-0.2	+0.3
carbon source	D-Glucose (C)	-1.2	+0.0	-0.3	-0.2	+0.2
nitrogen source	L-Pipecolic Acid (N)	+0.1	+0.1	+0.1	-0.1	-1.5
pH	pH 7	+0.5	-0.4	-0.6	-0.6	-0.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-1.5	+0.1	+0.0	+0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.7	-0.0	-0.7	+0.2	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.8	+0.0	-0.7	+0.6	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	-1.4	-0.1	+0.1	+0.5	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.0	-0.0	+0.9	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5	-0.3	-0.6	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	+0.1	+0.2	+0.4	+0.1
pH	pH 6	+1.1	-0.2	-0.2	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.1	+0.1	-0.2	-0.5	-0.1
stress	Growth with Chloride 500 mM; with MOPS	-0.8	+0.1	+0.6	+0.6	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.9	+0.2	+0.2	-0.0	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.6	-0.3	+0.6	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.2	+0.6	+0.7	-0.1
carbon source	carbon source D-Glucose 55.5 mM	+1.2	-0.3	-0.2	+0.2	-0.0
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.9	-0.2	-0.0	+0.6	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.9	+0.0	-0.1	+0.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	-0.1	+0.9	-0.3	-0.1