Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4043	PP_4044	PP_4045	PP_4046	PP_4047
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.5	-3.8	-0.2	-0.1
nitrogen source	2,6-diaminopimelic (N)	-0.3	-0.6	-1.3	-0.7	-0.6
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-0.3	-0.8	-1.4	-0.5	+0.2
carbon source	acetate (C)	+0.2	-0.1	-3.4	+0.3	+0.1
carbon source	Tween 20 (C)	-0.2	-0.3	-2.5	+0.1	+0.1
nitrogen source	Urea (N)	-0.2	-0.5	-1.3	-0.5	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.0	-0.2	-1.8	-0.1	-0.3
pH	Growth at pH6 and (C) D-Glucose	-0.1	+0.0	-2.0	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5	-0.2	-1.8	+0.3	+0.1
nitrogen source	D-2-Aminobutyric (N)	+0.4	-1.1	-1.4	-0.2	+0.1
nitrogen source	Urea (N)	-0.1	-0.5	-1.3	+0.2	-0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.1	+0.2	-1.8	+0.2	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.1	-0.2	-1.7	-0.2	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	+0.3	-0.5	-2.2	+0.3	+0.4
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.2	+0.2	-2.6	+0.1	+0.5
carbon source	Acetate Carbon Source (5mM)	-0.4	+0.1	-1.2	-0.4	+0.3
nitrogen source	no extra (N); with MOPS	+0.1	+0.3	-2.0	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.1	-1.5	+0.4	+0.0
carbon source	D-Glucose (C); with MOPS	+0.1	-0.5	-1.0	-0.4	+0.3
temperature	Growth at 10C; with MOPS	+0.2	-0.4	-1.6	+0.2	+0.3
carbon source	carbon source Glycerol 108.6 mM	+0.4	-0.1	-1.8	-0.0	+0.2
pH	Growth at pH8 and (C) D-Glucose	+0.0	+0.3	-1.4	+0.3	-0.6
temperature shift	Temperature shift 10_to_25	+0.1	-0.4	-1.3	-0.1	+0.4
pH	Growth at pH8 and (C) Trisodium citrate	+0.3	+0.0	-1.6	+0.2	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.1	-1.5	-0.4	+0.0
pH	Growth at pH9 and (C) Trisodium citrate	+0.2	+0.2	-1.6	+0.3	+0.2
pH	pH 4	+0.5	-0.2	-1.2	-0.2	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.5	+0.6	-0.9	+0.1	+0.4
nitrogen source	Ammonium chloride (N)	+0.6	-0.5	+0.5	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.6	-0.5	+0.2	+1.3