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Fitness for 5 genes in
Pseudomonas putida KT2440
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500 nt
PP_3948 and PP_3949 are separated by 3 nucleotides
PP_3949 and PP_3950 are separated by 204 nucleotides
PP_3950 and PP_3951 are separated by 378 nucleotides
PP_3951 and PP_3952 are separated by 8 nucleotides
PP_3948: PP_3948 - nicotinate dehydrogenase subunit B (EC 1.17.2.1)
(from data)
, at 4,450,397 to 4,453,960
_3948
PP_3949: PP_3949 - HTH-type transcriptional repressor NicS, at 4,453,964 to 4,454,602
_3949
PP_3950: PP_3950 - Methyl-accepting chemotaxis transducer, at 4,454,807 to 4,456,984
_3950
PP_3951: PP_3951 - 3-oxoadipate CoA-transferase subunit A, at 4,457,363 to 4,458,058
_3951
PP_3952: PP_3952 - 3-oxoadipate CoA-transferase subunit A, at 4,458,067 to 4,458,708
_3952
Group
Condition
PP
_3948
PP
_3949
PP
_3950
PP
_3951
PP
_3952
carbon source
benzoic (C)
-0.1
-0.0
-0.0
-8.1
-8.0
carbon source
p-Coumaric (C)
-0.1
-0.1
+0.1
-8.0
-7.6
carbon source
Protocatechuic Acid (C)
-0.1
-0.1
+0.1
-7.8
-7.7
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
+0.0
-7.9
-7.4
carbon source
p-Coumaric (C)
-0.1
-0.1
+0.1
-7.8
-7.3
carbon source
Protocatechuic Acid (C)
+0.0
-0.0
+0.0
-7.9
-7.1
carbon source
Vanillin (C)
+0.0
-0.0
+0.1
-6.4
-8.2
carbon source
Ferulic Acid (C)
+0.0
-0.0
-0.0
-7.1
-7.0
carbon source
Protocatechuic Acid (C)
-0.1
-0.0
+0.1
-7.1
-7.1
carbon source
Ferulic Acid (C)
-0.2
+0.0
+0.1
-7.2
-6.8
carbon source
Vanillic Acid (C)
+0.1
-0.0
+0.0
-7.3
-6.6
carbon source
p-Coumaric (C)
+0.0
-0.0
-0.0
-6.3
-6.9
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.1
+0.0
-5.5
-6.8
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.1
+0.0
-5.6
-6.1
carbon source
p-Coumaric (C)
-0.2
-0.0
-0.2
-5.5
-5.8
carbon source
Vanillic Acid (C)
+0.1
+0.1
-0.1
-5.2
-6.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.1
+0.1
-5.8
-5.8
carbon source
Vanillin (C)
-0.1
-0.1
-0.0
-5.8
-5.1
carbon source
benzoic (C)
+0.0
-0.0
+0.0
-5.1
-6.0
carbon source
Vanillin (C)
-0.0
+0.0
-0.1
-5.6
-5.2
carbon source
Quinic Acid (C)
-0.0
-0.1
-0.1
-4.6
-5.5
carbon source
benzoic (C)
+0.0
+0.0
+0.1
-5.1
-5.0
carbon source
Quinic Acid (C)
+0.1
-0.0
-0.1
-4.5
-5.0
carbon source
ferulate (C); with MOPS
-0.0
+0.2
-0.1
-5.2
-3.9
carbon source
ferulate (C); with MOPS
+0.0
+0.1
-0.2
-5.4
-3.4
carbon source
Vanillin (C)
+0.1
-0.0
+0.0
-3.7
-4.6
carbon source
ferulate (C); with MOPS
-0.4
+0.0
+0.0
-3.6
-3.7
carbon source
Ferulic Acid (C)
+0.0
+0.1
-0.1
-2.9
-4.5
carbon source
p-Coumaric (C)
+0.1
+0.1
+0.1
-3.8
-3.3
carbon source
L-Phenylalanine 5 mM (C)
-0.2
-0.1
-0.1
-3.9
-2.5
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