Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3935	PP_3938	PP_3939	PP_3940	PP_3941
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.1	-4.8	-0.1	-0.1	-0.0
phage	P. putida Sci small MOI 0.1	-0.4	-3.6	-0.3	+0.3	-0.6
carbon source	D-Glucose (C)	-1.5	-3.1	+0.1	+0.2	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	-1.2	-0.1	-0.2	-0.1
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.1	-1.6	+0.1	-0.4	-1.0
nitrogen source	D-2-Aminobutyric (N)	-0.2	-3.2	+0.2	+0.4	-0.0
stress	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM	-1.0	-1.6	-0.0	+0.1	+0.0
carbon source	ferulate (C); with MOPS	-0.3	-1.8	+0.2	-0.2	-0.3
phage	P. putida PUT 7 MOI 1	+0.5	-1.3	-0.5	-0.6	-0.4
carbon source	2-Methylbutanoic (C)	-0.1	-1.8	+0.1	+0.2	-0.4
nitrogen source	Nicotinic Acid (N)	+0.7	+0.1	-0.2	-0.8	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.3	-2.2	-0.2	+0.1	+0.1
pH	Growth at pH6 and (C) D-Glucose	-2.0	+0.2	-0.1	+0.0	+0.1
pH	Growth at pH9 and (C) Trisodium citrate	-1.1	-1.1	-0.1	+0.2	+0.4
carbon source	Heptanoic (C)	+0.2	-2.0	+0.0	-0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-1.3	+0.2	-0.7	-0.0
carbon source	L-Lysine 10 mM (C)	+0.5	-1.7	-0.2	+0.3	-0.4
nitrogen source	Nicotinic Acid (N)	+0.7	+0.4	-0.1	-0.7	-1.6
carbon source	carbon source D-Glucose 55.5 mM	+0.8	-1.0	-0.0	-0.1	-0.8
carbon source	ferulate (C); with MOPS	-2.5	+1.2	-0.0	+0.1	+0.2
pH	Growth at pH7 and (C) D-Glucose	+0.4	-1.7	+0.3	+0.0	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.0	+0.8	+0.2	-0.9	-0.9
temperature	Growth at 25C	-0.5	-1.2	+0.2	+0.4	+0.3
nitrogen source	NAG (N); with MOPS	+0.5	+0.6	-0.1	-0.5	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+1.5	-0.1	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.9	-0.4	-0.4	+0.9
nitrogen source	Propiolactam (N)	+1.3	-1.2	-0.1	+0.8	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+1.6	-0.2	+0.5	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-1.1	+0.4	+0.0	+0.9
nitrogen source	nitrate (N)	+0.2	+1.8	+0.1	+0.0	+0.4