Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3931	PP_3932	PP_3933	PP_3934	PP_3935
pH	Growth at pH6 and (C) D-Glucose	-0.6	+0.3	-0.0	-0.3	-2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.3	+0.1	-0.2	-1.5
carbon source	ferulate (C); with MOPS	+0.0	+0.0	-0.4	+0.3	-2.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.4	-0.3	-0.6	+0.3	-1.1
stress	Isobutyl alcohol 0.6 vol%	-0.2	-0.2	-0.0	+0.1	-1.7
nitrogen source	Propandiamine (N)	-0.4	-0.8	-0.0	-0.4	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	-0.3	+0.0	-0.2	-1.1
nitrogen source	NAG (N); with MOPS	-0.1	-0.5	+0.3	-0.0	-1.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7	-0.2	+0.3	-0.4	-0.7
carbon source	D-Glucose (C)	-0.4	+0.4	+0.2	-0.3	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.9	-0.3	-0.5	+0.1	+0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2	+0.2	-0.9	-0.6	+0.2
phage	P. putida PUT 7 MOI 1	-0.3	+0.2	-0.9	-0.8	+0.5
nitrogen source	Ammonium chloride (N)	-0.0	+0.3	-0.4	+0.2	-1.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.2	+0.2	-0.1	-0.3	-1.2
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.3	+0.3	-0.9	+0.4	-0.5
carbon source	carbon source Bisabolol 45 mM	-0.3	+0.3	-0.3	+0.3	-0.7
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.4	+0.1	-0.7	+0.5	-0.2
carbon source	carbon source Bisabolene 48.9 mM	-0.2	+0.4	-0.8	+0.4	-0.5
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.5	+0.3	-0.6	+0.5	-0.3
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.6	+0.4	-0.6	+0.6	-0.3
carbon source	ferulate (C); with MOPS	+0.3	-0.1	-0.4	+0.4	-0.8
carbon source	carbon source D-Glucose 55.5 mM	-1.1	+0.2	-0.6	+0.3	+0.8
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.6	+0.6	-0.6	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.3	-0.4	-0.0	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	-0.3	-0.7	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.7	+0.2	-0.6	+0.1
nitrogen source	Propiolactam (N)	+0.3	+0.2	+0.6	+0.2	-0.9
phage	P. put South MOI 10	+0.3	+0.3	+0.3	-0.1	+1.0
nitrogen source	Propiolactam (N)	+0.2	+0.2	+0.4	+0.3	+1.3