Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3901 and PP_3902 are separated by 118 nucleotidesPP_3902 and PP_3903 overlap by 11 nucleotidesPP_3903 and PP_3904 are separated by 205 nucleotidesPP_3904 and PP_3905 are separated by 8 nucleotides PP_3901: PP_3901 - conserved protein of unknown function, at 4,415,798 to 4,416,058 _3901 PP_3902: PP_3902 - conserved protein of unknown function, at 4,416,177 to 4,416,485 _3902 PP_3903: PP_3903 - conserved protein of unknown function, at 4,416,475 to 4,416,639 _3903 PP_3904: PP_3904 - conserved protein of unknown function, at 4,416,845 to 4,417,099 _3904 PP_3905: PP_3905 - Transcriptional regulator, LuxR family, at 4,417,108 to 4,417,659 _3905
Group Condition PP_3901 PP_3902 PP_3903 PP_3904 PP_3905
nitrogen source NAG (N); with MOPS +0.2 -5.7 -2.7 -0.7 N.D.
carbon source D-Glucose (C) +0.4 -1.1 -5.1 -0.9 N.D.
carbon source Myristic (C) -0.6 -0.6 -4.4 -0.6 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.2 -0.7 -5.1 -0.3 N.D.
pH Growth at pH6 and (C) D-Glucose +0.2 -3.6 +0.3 -2.1 N.D.
nitrogen source NAG (N); with MOPS -0.3 -4.1 -0.1 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.1 -2.7 -2.0 -0.2 N.D.
pH Growth at pH7 and (C) D-Glucose -0.1 -5.8 +1.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 +0.0 -3.7 -0.3 N.D.
carbon source ferulate (C); with MOPS -0.2 -2.7 -1.8 +0.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.9 -2.3 -0.6 N.D.
carbon source butyrate (C) +0.5 -2.1 -1.6 -0.7 N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1 +0.1 -0.8 -2.5 -0.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -2.2 -0.7 +0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 -2.3 -1.4 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.6 -0.7 -2.0 N.D.
nitrogen source Urea (N); with MOPS -0.8 -3.5 +1.4 +0.2 N.D.
carbon source Tween 20 (C) +0.7 -1.0 -1.7 -0.5 N.D.
carbon source L-Leucine (C) +0.6 -0.2 -3.4 +0.7 N.D.
temperature shift Temperature shift 30_to_34; with MOPS +0.4 +0.7 -2.5 -0.5 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.3 -1.3 -1.4 +0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.6 -1.2 -1.5 +0.5 N.D.
phage P. putida Sci Big MOI 0.1 +0.7 +0.3 -2.9 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -2.0 -0.0 +1.2 N.D.
carbon source D-Lysine 10 mM (C) -0.1 -1.9 +0.8 +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +1.9 -1.3 -0.2 N.D.
nitrogen source D-2-Aminobutyric (N) -0.0 +2.0 +0.1 -1.5 N.D.
temperature Growth at 25C -1.4 +1.0 +1.6 -0.1 N.D.
phage P. put South MOI 1 +0.0 +1.2 +1.5 -1.4 N.D.
phage PUT8 MOI 0.1 +0.6 +1.1 +1.6 -0.4 N.D.
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