Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3842	PP_3843	PP_3844	PP_3845	PP_3846
nitrogen source	NAG (N); with MOPS	-0.0	-0.4	-0.3	+0.1	-0.8
carbon source	D-Glucose (C)	-0.3	-0.1	-0.0	+0.1	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.2	-0.5	-0.2	-0.1	+0.0
pH	Growth at pH6 and (C) Trisodium citrate	+0.0	-0.0	-0.1	+0.1	-0.8
temperature	Growth at 30C; with MOPS	-0.0	-0.1	-0.3	+0.1	-0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.1	-0.4	+0.1	-0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	-0.3	-0.3	+0.1	+0.2
temperature shift	Temperature shift 30_to_25; with MOPS	+0.1	+0.1	-0.4	+0.1	-0.5
stress	Growth with Chloride 200 mM; with MOPS	+0.1	+0.2	-0.3	+0.1	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.1	+0.2	-0.2	+0.3	-0.3
carbon source	Valerolactone (C)	-0.0	-0.0	+0.2	+0.4	-0.7
temperature	Growth at 25C	-0.0	-0.3	-0.1	-0.2	+0.5
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.0	-0.4	+0.2	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.3	-0.1	-0.1	+0.4
carbon source	D-Glucose (C)	+0.0	+0.3	-0.0	+0.2	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.1	+0.2	-0.3	+0.0	+0.5
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	+0.3	-0.3	-0.1	+0.3
stress	Growth with Chloride 500 mM; with MOPS	+0.0	+0.4	+0.0	+0.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	-0.2	-0.1	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	+0.1	+0.0	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.0	-0.2	+0.2	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.3	-0.4	+0.1	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	-0.2	+0.2	+0.1	+0.4
carbon source	D-Glucuronic gamma lactone (C)	+0.1	+0.2	-0.1	+0.3	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.0	+0.6	+0.1	-0.1	+0.3
phage	P. putida Sci small MOI 0.1	+0.2	-0.2	+0.3	+0.4	+0.6
phage	P. putida Sci Big MOI 0.1	+0.4	+0.3	+0.5	+0.1	+0.2
phage	P. putida Missley MOI 0.1	+0.5	+0.2	+0.4	+0.5	+0.2
phage	P. putida Sci small MOI 0.1	+0.3	+0.3	+0.3	+0.4	+0.7
phage	P. putida PUT 7 MOI 1	+0.5	+0.3	+0.4	+0.3	+0.6