Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3819 and PP_3820 are separated by 122 nucleotidesPP_3820 and PP_3821 are separated by 473 nucleotidesPP_3821 and PP_3822 are separated by 236 nucleotidesPP_3822 and PP_3823 overlap by 4 nucleotides PP_3819: PP_3819 - glutathione reductase (NADPH), at 4,345,736 to 4,347,091 _3819 PP_3820: PP_3820 - Group II intron-encoding maturase, at 4,347,214 to 4,348,635 _3820 PP_3821: PP_3821 - UTP-glucose-1-phosphate uridylyltransferase, at 4,349,109 to 4,349,948 _3821 PP_3822: PP_3822 - Cytochrome c family protein, at 4,350,185 to 4,351,099 _3822 PP_3823: PP_3823 - Cytochrome c-type protein, at 4,351,096 to 4,351,749 _3823
Group Condition PP_3819 PP_3820 PP_3821 PP_3822 PP_3823
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 N.D. -5.8 -0.4 -0.4
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.9 N.D. -5.3 -0.1 +0.3
carbon source 1,3-Hexanediol (C) -0.6 N.D. -5.8 -0.1 -0.3
carbon source 1,3-Hexanediol (C) -0.3 N.D. -5.8 -0.1 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6 N.D. -5.2 -0.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 N.D. -5.2 -0.2 -0.0
carbon source 2-Methylbutanoic (C) -0.7 N.D. -5.2 -0.0 -0.1
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -0.5 N.D. -5.2 -0.1 -0.3
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -0.4 N.D. -5.3 -0.0 -0.2
pH Valerolactone (C) pH 6.5 -0.4 N.D. -4.9 -0.1 -0.5
carbon source Quinic Acid (C) -0.2 N.D. -5.9 +0.0 +0.2
carbon source 2,3-Butanediol (C) +0.1 N.D. -5.7 -0.1 +0.0
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -0.5 N.D. -5.3 +0.0 -0.0
carbon source 2-Methylbutanoic (C) -0.9 N.D. -4.9 -0.1 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 N.D. -5.5 -0.3 +0.4
carbon source Delta-Dodecalactone (C) -1.3 N.D. -3.8 -0.0 -0.2
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL +0.1 N.D. -5.1 -0.0 -0.3
carbon source Glutaric (C) +0.1 N.D. -5.1 -0.0 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -4.5 +0.0 +0.5
carbon source Glutaric (C) +0.1 N.D. -5.2 +0.3 +0.2
carbon source D-Glucose (C) 5 mM +0.1 N.D. -4.8 +0.2 +0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. -3.8 -0.1 +0.9
carbon source Delta-Decalactone (C) -0.7 N.D. +4.1 +0.2 -0.3
carbon source Delta-Decalactone (C) -0.6 N.D. +4.6 +0.1 +0.3
phage P. putida PUT 7 MOI 1 -0.0 N.D. +6.3 +0.3 -0.3
carbon source Delta-Nonalactone (C) -0.9 N.D. +7.3 +0.0 +0.1
phage P. putida Missley MOI 0.1 +0.4 N.D. +6.6 -0.2 +0.1
phage P. putida Sci small MOI 0.1 +0.3 N.D. +6.5 +0.2 +0.0
phage P. putida Sci small MOI 0.1 +0.1 N.D. +6.9 +0.5 +0.4
phage P. putida Sci Big MOI 0.1 -0.3 N.D. +9.5 -0.2 -0.2
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