Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_3817 and PP_3818 are separated by 155 nucleotidesPP_3818 and PP_3819 are separated by 3 nucleotidesPP_3819 and PP_3820 are separated by 122 nucleotidesPP_3820 and PP_3821 are separated by 473 nucleotides PP_3817: PP_3817 - Polyamine ABC transporter, ATP-binding protein, at 4,343,121 to 4,344,269 _3817 PP_3818: PP_3818 - Periplamic phosphate-binding protein, at 4,344,425 to 4,345,732 _3818 PP_3819: PP_3819 - glutathione reductase (NADPH), at 4,345,736 to 4,347,091 _3819 PP_3820: PP_3820 - Group II intron-encoding maturase, at 4,347,214 to 4,348,635 _3820 PP_3821: PP_3821 - UTP-glucose-1-phosphate uridylyltransferase, at 4,349,109 to 4,349,948 _3821
Group Condition PP_3817 PP_3818 PP_3819 PP_3820 PP_3821
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.6 -0.3 -1.9 N.D. -5.3
carbon source 1,3-Hexanediol (C) -0.2 -0.1 -0.6 N.D. -5.8
carbon source 2-Methylbutanoic (C) -0.9 +0.3 -0.7 N.D. -5.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 +0.0 -0.8 N.D. -5.8
carbon source 1,3-Hexanediol (C) -0.1 -0.0 -0.3 N.D. -5.8
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 -0.3 -0.6 N.D. -5.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.1 -0.7 N.D. -5.2
carbon source Quinic Acid (C) +0.0 +0.0 -0.2 N.D. -5.9
pH Valerolactone (C) pH 6.5 -0.8 +0.2 -0.4 N.D. -4.9
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -0.2 +0.1 -0.4 N.D. -5.3
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -0.1 +0.1 -0.5 N.D. -5.3
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL +0.1 -0.1 -0.5 N.D. -5.2
carbon source 2-Methylbutanoic (C) -0.1 +0.2 -0.9 N.D. -4.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 +0.1 -0.1 N.D. -5.5
carbon source 2,3-Butanediol (C) +0.0 +0.1 +0.1 N.D. -5.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.3 -0.6 N.D. -4.5
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -0.6 +0.2 +0.1 N.D. -5.1
carbon source Delta-Dodecalactone (C) -0.5 +0.3 -1.3 N.D. -3.8
carbon source 3-Hydroxypropionate (C) -0.3 -0.1 -0.3 N.D. -4.4
carbon source Glutaric (C) -0.0 +0.0 +0.1 N.D. -5.2
carbon source D-Glucose (C) 5 mM -0.3 +0.1 +0.1 N.D. -4.8
carbon source Glutaric (C) +0.1 +0.2 +0.1 N.D. -5.1
carbon source Delta-Decalactone (C) -0.2 +0.1 -0.7 N.D. +4.1
carbon source Delta-Decalactone (C) +0.2 -0.4 -0.6 N.D. +4.6
phage P. putida PUT 7 MOI 1 -0.8 -0.2 -0.0 N.D. +6.3
carbon source Delta-Nonalactone (C) +0.2 +0.1 -0.9 N.D. +7.3
phage P. putida Missley MOI 0.1 -0.1 -0.3 +0.4 N.D. +6.6
phage P. putida Sci small MOI 0.1 -0.0 +0.1 +0.3 N.D. +6.5
phage P. putida Sci small MOI 0.1 +0.6 +0.5 +0.1 N.D. +6.9
phage P. putida Sci Big MOI 0.1 -0.2 -0.7 -0.3 N.D. +9.5
remove
PP_3817
plot		 remove
PP_3818
plot		 remove
PP_3819		 remove
PP_3820
plot		 remove
PP_3821
plot